Query= MSMg01no523_n01.b1 MSMg01no523_n01.b1 CHROMAT_FILE:
MSMg01no523_n01.b1 PHD_FILE: MSMg01no523_n01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:52 2005
(540 letters)
>mm_chr11_61356356_61357295
Length = 940
Score = 1013 bits (524), Expect = 0.0
Identities = 533/536 (99%)
Strand = Plus / Minus
Query: 5 gaattcaatgggtaactaaaaaatggggcttctcttttgcctaattaataatgcatcctg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gaattcaatgggtaactaaaaaatggggcttctcttttgcctaattaataatgcatcctg 681
Query: 65 gtcagagctacactgttgcaggttaaactggaaacagattttcactgttgctcacaagaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gtcagagctacactgttgcaggttaaactggaaacagattttcactgttgctcacaagaa 621
Query: 125 aatagtctcagtctaatctccctttggtcataaatgggttctcactggagaagaaagctc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aatagtctcagtctaatctccctttggtcataaatgggttctcactggagaagaaagctc 561
Query: 185 tcttctacttttgtccaaggggcaccaacagcaagcctttgtgtaatttccctgataagg 244
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tcttctacttttgcccaaggggcaccaacagcaagcctttgtgtaatttccctgataagg 501
Query: 245 tagccaacctctattgagccctggagacagatctcactcattcatgcctcactaatatta 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tagccaacctctattgagccctggagacagatctcactcattcatgcctcactaatatta 441
Query: 305 caacctgcttaacttgagtatttctgtgatcattatatttagatctgggatattttcctt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 caacctgcttaacttgagtatttctgtgatcattatatttagatctgggatattttcctt 381
Query: 365 tgtgtcctgtcttctaagagtttgtatgggcttttggctttactgtttggaaaggtaaga 424
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tgtgtcctgtcttctaagagtttgtatgggcttttggctttactgtttggaaaggtaagg 321
Query: 425 aagaccagctttacacagttactgatgtcagggttagaactgtttggaagggtttcccag 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aagaccagctttacacagttactgatgtcagggttagaactgtttggaagggtttcccag 261
Query: 485 tgacatggaagttgcatacccattattttgctaccacttacttaggatctgttctc 540
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 260 tgacatggaagttgcatacccattattttgctaccacttgcttaggatctgttctc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space: 492900
Effective search space used: 492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no523_n01.g1 MSMg01no523_n01.g1 CHROMAT_FILE:
MSMg01no523_n01.g1 PHD_FILE: MSMg01no523_n01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:52 2005
(493 letters)
>mm_chr11_61178981_61179873
Length = 893
Score = 861 bits (445), Expect = 0.0
Identities = 480/495 (96%), Gaps = 8/495 (1%)
Strand = Plus / Plus
Query: 1 agcccagtaggaaattacctaatgacagctgccttgtctgatgacctgagttcaatccta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 agcccagtaggaaattacctaatgacagctgccttgtctgatgacctgagttcaatccta 264
Query: 61 gggcccacatggtagaaggagaaaactgactcccacaaattatcctccgacctacacata 120
|| ||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 265 ggacccacgtggtagaaggagaaaactgactcccacaaattctcctctgacctacacata 324
Query: 121 cgtgctgtggcatgcacattcacacactcgtacatgtacacacacacacacgatagatag 180
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 325 cgtgctgtggcatgcacattcacacactcgtacatgtacacatgcacacacgatagatag 384
Query: 181 atagatagatagatagatagatagatagatagatagatagatagatagatagataacttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 385 atagatagatagatagatagatagatagatagatagatagatagatagata----acttt 440
Query: 241 caacagaaagaaaatgacagacaagacccacaggactaggtgactgaccaaacaggaaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 441 caacagaaagaaaatgacagacaagacccacaggactaggtgactgaccaaacag--aca 498
Query: 301 --tgaaagaaaagataaagccacagggacaacagcctgtgagagacagagtagagggaga 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 cgtgaaagaaaagataaagccacagggacaacagcctgtgagagacagagtagagggaga 558
Query: 359 aaaaaacagaggccaccatacagtgtggagggggcggcaggccaagatgagtgacatatt 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 aaaaaacagaggccaccatacagtgtggagggggcggcaggccaagatgagtgacatatt 618
Query: 419 ccccattgcctcaaggcagctatggaagctatgcagctattatggatgacaactggagac 478
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 619 ccccattgcctcaaggcagctatggaagccatgcagctattatggatgacaactggagac 678
Query: 479 gtgcaggaagcagct 493
|||||||||||||||
Sbjct: 679 gtgcaggaagcagct 693
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 65
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space: 426489
Effective search space used: 426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
