Query= MSMg01no524_d01.b1 MSMg01no524_d01.b1 CHROMAT_FILE:
MSMg01no524_d01.b1 PHD_FILE: MSMg01no524_d01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:23 2005
(716 letters)
>mm_chr11_5936230_5937345
Length = 1116
Score = 934 bits (483), Expect = 0.0
Identities = 536/573 (93%), Gaps = 30/573 (5%)
Strand = Plus / Minus
Query: 7 gaattcagagagaagccgggtaccctgctagggatttctccatctgagatgtgctcatag 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 543 gaattcagagagaagccgggtaccctgctagggatttctccatctgagatgtgctcacag 484
Query: 67 agcctccaagggcagcagctgtgggctggggtgaagccaaggaatctgggtgtgtgtttt 126
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 483 agcctccaagggcagcagctgtgggctggggtgaagtcaaggaatctgggtgtgtgtttt 424
Query: 127 gatgaatgacatagtcagccttccttcagaagcttctgctatgggcttctgtgggtcaca 186
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 gatggatgacatagtcacccttccttcagaagcttctgctatgggcttctgtgggtcaca 364
Query: 187 cggagttccagccatagtcagtgttccttcctcaaaatgtttggttctcttggagccttt 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 cggagttccagccatagtcagtgttccttcctcaaaatgtttggttctcttggagccttt 304
Query: 247 tttgaatgaagatttctgtagcaaatatgttaggagaaagctgctttcctgggagactca 306
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 303 tttgaatgaagatttctgtagcaaatatgttaggagaaagccgctttcctgggagactca 244
Query: 307 cggggctgatggctaaacaaaagaacctgaaagtcctacacacacacaaacacacacaca 366
| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 ccgggctgatggctaaacaaaagaacctgaaagtcctacacacacaca------------ 196
Query: 367 cacacacacacacacacacacacacacacacacacaaagaatgttccatttcatacccac 426
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 ------------------cacacacacacacacacaaagaatgttccatttcatacccac 154
Query: 427 actatatatccacatgcacacacaaacaaacacaaaataagtaagatgaaaaattaaaaa 486
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 accatatatccacatgcacacacaaacaaacacaaaataagtaagatgaaaaattaaaaa 94
Query: 487 tacagttgggcatagtagtacatgtctttgatcccaccaattgggagtcagaggcaggca 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93 tacagttgggcatagtagtacatgtctttgatcccaccaattgggagtcagaggcaggca 34
Query: 547 gagctctaagttcaaggccagcctggtctacaa 579
|||||||||||||||||||||||||||||||||
Sbjct: 33 gagctctaagttcaaggccagcctggtctacaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 716
Length of database: 1116
Length adjustment: 10
Effective length of query: 706
Effective length of database: 1106
Effective search space: 780836
Effective search space used: 780836
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no524_d01.g1 MSMg01no524_d01.g1 CHROMAT_FILE:
MSMg01no524_d01.g1 PHD_FILE: MSMg01no524_d01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:23 2005
(642 letters)
>mm_chr11_5790267_5791307
Length = 1041
Score = 1187 bits (614), Expect = 0.0
Identities = 635/642 (98%), Gaps = 1/642 (0%)
Strand = Plus / Plus
Query: 1 actgtgggctactgaagttcttccaacacagatgagctggccaggcgtgctccatcgtct 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct: 201 actgtgggctactgaagttcttccaacacagatgagctggccaggcgtgcaccattgtct 260
Query: 61 cagggttggcctgagctctctggtcttggttcttcatgccttccattcagttctggcttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagggttggcctgagctctctggtcttggttcttcatgccttccattcagttctggcttc 320
Query: 121 aggagactgcacagagagccctaggttcctgtggagttagtgaccaaccagcaactgggg 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggagactgcacagagagccctaggttcctgtggagttagtgaccaaccagcaactggg- 379
Query: 181 tgggtgagaggatagtgacattctgttccttacaacacgtgctagagtctcaaatttgtg 240
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 380 tgggtgagaggatagtgacattctgtttcttacaacacgtgctagagtctcaaatttgtg 439
Query: 241 ttgatctttctcattggctaatggtattgatagactccactgggacattgactaagccga 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ttgatctttcttattggctaatggtattgatagactccactgggacattgactaagccga 499
Query: 301 tgtaccacagatctgcaggacaggcctggccagattttgttggctcaaaataagatgctg 360
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 500 tggaccacagatctgcaggacaggcctggccagattttgttggctcaaaacaagatgctg 559
Query: 361 taggtgaccatgtggctcctggtgccttactgcctgagcttgggcatggccatttgacag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 taggtgaccatgtggctcctggtgccttactgcctgagcttgggcatggccatttgacag 619
Query: 421 gagataagggtccatgggaatcttctatgagctctaggagaatggctaagggccaggccg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gagataagggtccatgggaatcttctatgagctctaggagaatggctaagggccaggccg 679
Query: 481 ctgtctgtatataatctcttactctgttttcctgtttgacagggtcctctcactatgtag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ctgtctgtatataatctcttactctgttttcctgtttgacagggtcctctcactatgtag 739
Query: 541 ctttggctgacttggaactcactgggtagaccagatccctcagactcatagagatccacc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ctttggctgacttggaactcactgggtagaccagatccctcagactcatagagatccacc 799
Query: 601 ggcctctgtctcctgactgctgggattaaagatgtgtacccc 642
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 ggcctctgtctcctgactgctgggattaaagatgtgtacccc 841
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1041
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1031
Effective search space: 651592
Effective search space used: 651592
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
