Query= MSMg01no524_h15.b1 MSMg01no524_h15.b1 CHROMAT_FILE:
MSMg01no524_h15.b1 PHD_FILE: MSMg01no524_h15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:46 2005
(589 letters)
>mm_chr11_83962577_83963567
Length = 991
Score = 818 bits (423), Expect = 0.0
Identities = 505/556 (90%), Gaps = 40/556 (7%)
Strand = Plus / Plus
Query: 38 gctgccttgagctcttgatcctcctgcctccatctcccaagtgctgggaatatggtgtgt 97
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 gctgccttgagctcttgatcctcctgcctccatctcccaagtgctgggaatatggtgtgt 306
Query: 98 gctaccacacctgtggggagtggataaagtcctgagtgaatcttagacctcttctggcct 157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gctaccacacctgtggggagtggataaagtcctgagtgaatcttagacctcttctggcct 366
Query: 158 ccacaggcaccaggaatgaacatggtgtacatacatatattcaggcaaaacacccatgct 217
||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 367 ccacaggcaccaggaatgaacat---------acatatattcaggcaaaacacccatgct 417
Query: 218 cataagcttagaacatgctaatcttgccccaagtcgacaagtgcattcacatgtttgaat 277
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 418 cataagcttagaacatgctaatcttgccccaaggcgacaagtgcattcacatgtttgagt 477
Query: 278 accgagataagaaaagtctgtcactaggttgggggatggggtgcttgtcactattctggg 337
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 478 accgagataagaaaagtctgtcactaggttgggggatggggtacttgtcactattctggg 537
Query: 338 cttgaa--gaatattctattttttttaaaggtcatttttttattaggtattttcttcatt 395
|||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 538 cttgaaaagaatattctatttttttttaaggtcatttttttattaggtattttcttcatt 597
Query: 396 tacatttccaatgctatcccaaaagtcccccc-atacccttccccctctgctccc-ccac 453
|||||||||||||||||||||||||||||||| ||||||| ||||| || | ||| ||||
Sbjct: 598 tacatttccaatgctatcccaaaagtcccccccataccctccccccactccccccaccac 657
Query: 454 tcccacttcttggccctggcgttcccctgtactgaggcatatagtgtttgcaagactgat 513
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 658 tcccacttcttggccctggcattcccctgtactgaggcatatagtgtttgcaagac---- 713
Query: 514 gggcctctctttccaatgatggccgactaggccatcttctgatacatatgcagctagaga 573
|||||||||||||||||||||||||||||||||||||
Sbjct: 714 -----------------------cgactaggccatcttctgatacatatgcagctagaga 750
Query: 574 caccanctgggggtgg 589
||| | ||||||||||
Sbjct: 751 cacgagctgggggtgg 766
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 991
Length adjustment: 10
Effective length of query: 579
Effective length of database: 981
Effective search space: 567999
Effective search space used: 567999
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no524_h15.g1 MSMg01no524_h15.g1 CHROMAT_FILE:
MSMg01no524_h15.g1 PHD_FILE: MSMg01no524_h15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:46 2005
(316 letters)
>mm_chr11_84132916_84133631
Length = 716
Score = 586 bits (303), Expect = e-172
Identities = 306/307 (99%)
Strand = Plus / Minus
Query: 1 ctacaattgctggattgccacaaaataaaaccaccataccagtttttaatcatttttaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 ctacaattgctggattgccacaaaataaaaccaccataccagtttttaatcatttttaac 415
Query: 61 tcaaatatttctagaagagtacttcatactccatatatttagctagttttatttgctcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 tcaaatatttctagaagagtacttcatactccatatatttagctagttttatttgctcat 355
Query: 121 gaatatttataagggatgccattatttcaattcaattaatatttattgagtgctcagagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 gaatatttataagggatgccattatttcaattcaattaatatttattgagtgctcagagg 295
Query: 181 ttgtataacactaaactaggcactttatgtatgagcacataaaatatagattcccaacac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 ttgtataacactaaactaggcactttatgtatgagcacataaaatatagattcccaacac 235
Query: 241 tctgaatacaaatggagattgggatgaaaaggggcgtgtgtgtgtgtgtgtgtgtgtgtg 300
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 234 tctgaatacaaatggagattgggatgaaaaggggtgtgtgtgtgtgtgtgtgtgtgtgtg 175
Query: 301 tgtgtgt 307
|||||||
Sbjct: 174 tgtgtgt 168
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space: 217049
Effective search space used: 217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
