BAC Information

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BAC

Clone NameMSMg01-524I01
Chromosome11 (Build37)
Map Location 4,614,709 - 4,615,262
singlet/doubletsinglet
Overlap geneZmat5
Upstream geneOsbp2, LOC664920, 4921536K21Rik, Dusp18, Slc35e4, Tcn2, LOC100041720, Pes1, Gal3st1, Sec14l4, Sec14l3, 1700020C11Rik, Sec14l2, LOC625729, Rnf215, 4930562D19Rik, Sf3a1, Tbc1d10a, 2410008K03Rik, LOC625760, Osm, Lif, Hormad2, Mtmr3, LOC100041006, OTTMUSG00000005065, Ascc2, 1110020P15Rik
Downstream geneCabp7, Nf2, Nipsnap1, Thoc5, Nefh, Ap1b1, Rasl10a, Gas2l1, Ewsr1, Rhbdd3, Emid1, Kremen1, Znrf3, LOC100042016, LOC382478, Xbp1, Ccdc117, LOC100041183, Ankrd36, LOC665181, Mrps24, 2010005J08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-524I01.T7 (MSMg01no524_i01.b1)MSMg01-524I01.TJ (MSMg01no524_i01.g1)
ACCAG594565AG594566
length763749
length of high quality
(start - end)		558 (36 - 593)485 (70 - 554)
definitionCHROMAT_FILE: MSMg01no524_i01.b1 PHD_FILE: MSMg01no524_i01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:58:48 2005CHROMAT_FILE: MSMg01no524_i01.g1 PHD_FILE: MSMg01no524_i01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:58:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGTTG
GATATTGCTGCCCAGTGGGATCTTGGGACACACAGCTTGTTACTTTGTAC
AGTGTCCACTATGTCAGCCATCCCGGCACATACCCAGTGGGTCCAGGGAC
TGAGAGCAGAGACTGTGGTAAGGTATGAACCCCTGCTTGGGAGGAAGGAA
ATGTTCATCGCATGTGTGGCTGGTGAGAAAAATAAGTGGATAATGAATGG
GGAAGTACGGCCCCTTAGGACTGTGCATGTGCTAGTGGGAGTGGCTTCCC
ATGAAGGAAGTCTTTGTATCTGTGGTTATCATAGATTGTTGTTTTGTTTT
GTTGGTTTTTTTTCGAAACACAGTTTCTCTGTATAGCCCTGGCTGTCCTG
GAACTCACTTTGTAGACCAGGCTGTCTTCGAACTCAGAAATCCACCTGCC
TCTGCCTCCCGAGTGCTGGGATTAAAGGCATGAACCACCACTGGCCGGCA
CAGATTGTTAAATGCTCCATTTGTTTGGTTTGATTTTCACTTGTTTGGTT
GGTTTTTAGTTTTTGGGGTTTGTTTGTTTGTTTGTTTGTTTGATTGTTTG
TTTGACGCANGTTTTCTCTTCATAATTCTGACTGCCCTGGTATTCTCTAT
AAAGTCCCAACTATTCCTTGAATTTATATGAGATTCTCCTGCCTCTGCCT
CTCTACTATCTGGATTTAAAGTACTTGCCCCTTTATCCCCACCTGCTAAA
TGGGTTCTTTTAA

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAAGTTGGCCTTAAGCTATGACCTTGAACTT
TGATGTTCCTCTGGAATTGTGCGGTCTATGCTACAGGCTCTTTCTGTGCT
GGGGACTTAACCCAGGGCTTTTTGTATGCTAAAGAAGCACTCTACCAACT
GAGCCTTTATTTTTTTTCTTTTAAAACTCCTCTCACTTGGTGTGGTGGTG
CACACCTTTTTTTTTTTAAAAAAAAGATTTATTTATTTATTATATGAAAG
TACATTGTAGCTGTCTTCAGACACTTCAGAAGAGGGAGTCAGATCTCGTG
TACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCTGGAC
CTTCGGAAGAGCAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCC
CCGGTGGTGCACACCTTTAATCCCAGCACTCGGGAGGCANANGCAGGTGG
GTTTCTGAGTTCCAGGCCAGCCTGGTCTACAAAGTGAGTTCGGAAAAAAC
AAACAAAAAACCAAAACAAAACAAAAACTTCCTTCCTGCCCCTAACAGGA
TTTCTCTGTATAGCACTGGCTGTCCTGAAATCTGCTCTGTAAATCAAGTG
GGGCTTCTTCACTTCTCTTCTCTTTCCACTCCCTTCCCTTCACTTAAACA
ANCNTATCTTCTTCAATACTNCNTGATCTGCTTCTGACTTACACTATCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no524_i01.b1 MSMg01no524_i01.b1 CHROMAT_FILE:
MSMg01no524_i01.b1 PHD_FILE: MSMg01no524_i01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:48 2005
         (558 letters)



>mm_chr11_4614506_4615463
          Length = 958

 Score = 1033 bits (534), Expect = 0.0
 Identities = 549/554 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctgttggatattgctgcccagtgggatcttgggacacacagcttgttactttgt 63
           ||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctgttggatacaggtgcccagtgggatcttgggacacacagcttgttactttgt 263

                                                                       
Query: 64  acagtgtccactatgtcagccatcccggcacatacccagtgggtccagggactgagagca 123
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 264 acagtgtccactatgtcagccatcccagcacatacccagtgggtccagggactgagagca 323

                                                                       
Query: 124 gagactgtggtaaggtatgaacccctgcttgggaggaaggaaatgttcatcgcatgtgtg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gagactgtggtaaggtatgaacccctgcttgggaggaaggaaatgttcatcgcatgtgtg 383

                                                                       
Query: 184 gctggtgagaaaaataagtggataatgaatggggaagtacggccccttaggactgtgcat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gctggtgagaaaaataagtggataatgaatggggaagtacggccccttaggactgtgcat 443

                                                                       
Query: 244 gtgctagtgggagtggcttcccatgaaggaagtctttgtatctgtggttatcatagattg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gtgctagtgggagtggcttcccatgaaggaagtctttgtatctgtggttatcatagattg 503

                                                                       
Query: 304 ttgttttgttttgttggttttttttcgaaacacagtttctctgtatagccctggctgtcc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttgttttgttttgttggttttttttcgaaacacagtttctctgtatagccctggctgtcc 563

                                                                       
Query: 364 tggaactcactttgtagaccaggctgtcttcgaactcagaaatccacctgcctctgcctc 423
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tagaactcactttgtagaccaggctgtcttcgaactcagaaatccacctgcctctgcctc 623

                                                                       
Query: 424 ccgagtgctgggattaaaggcatgaaccaccactggccggcacagattgttaaatgctcc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ccgagtgctgggattaaaggcatgaaccaccactggccggcacagattgttaaatgctcc 683

                                                                       
Query: 484 atttgtttggtttgattttcacttgtttggttggtttttagtttttggggtttgtttgtt 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 atttgtttggtttgattttcacttgtttggttggtttttagtttttggggtttgtttgtt 743

                         
Query: 544 tgtttgtttgtttg 557
           ||||||||||||||
Sbjct: 744 tgtttgtttgtttg 757


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 958
Length adjustment: 10
Effective length of query: 548
Effective length of database: 948
Effective search space:   519504
Effective search space used:   519504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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