BAC Information

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BAC

Clone NameMSMg01-524M03
Chromosome11 (Build37)
Map Location 4,882,633 - 4,883,222
singlet/doubletsinglet
Overlap genenone
Upstream geneGal3st1, Sec14l4, Sec14l3, 1700020C11Rik, Sec14l2, LOC625729, Rnf215, 4930562D19Rik, Sf3a1, Tbc1d10a, 2410008K03Rik, LOC625760, Osm, Lif, Hormad2, Mtmr3, LOC100041006, OTTMUSG00000005065, Ascc2, 1110020P15Rik, Zmat5, Cabp7, Nf2, Nipsnap1, Thoc5, Nefh
Downstream geneAp1b1, Rasl10a, Gas2l1, Ewsr1, Rhbdd3, Emid1, Kremen1, Znrf3, LOC100042016, LOC382478, Xbp1, Ccdc117, LOC100041183, Ankrd36, LOC665181, Mrps24, 2010005J08Rik, 2210015D19Rik, Dbnl, Pgam2, Polm, Aebp1, Pold2, Myl7, Gck, Ykt6, Camk2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-524M03.T7 (MSMg01no524_m03.b1)MSMg01-524M03.TJ (MSMg01no524_m03.g1)
ACCAG594759AG594760
length765493
length of high quality
(start - end)
605 (35 - 639)---
definitionCHROMAT_FILE: MSMg01no524_m03.b1 PHD_FILE: MSMg01no524_m03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:59:07 2005CHROMAT_FILE: MSMg01no524_m03.g1 PHD_FILE: MSMg01no524_m03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:59:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAATGA
GGCAGGAACCTAGAGGCTGGAGCGAGGCAGGGAGGGGCTGCTTTCTTATA
GCACCCAGGGCCATCAGCCTAGGGATGGCACTGCTCACAATCACTGATTA
AGAAACTGACCTGCCGGGTGTGGTGGCGCACGCCTTTAATCACAGCACTC
GGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACA
GAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAATTCTGTCTCAAAA
AACCAAAAAAAAAAAAAAAAAAAAAAAAGAAAGAAAGAAAGAAAAGAAAC
TGTCCTACATGCCTGCCTACAGCTCCAGCTTATGGGGACACTTTCTCAAC
TGAGAGTCCCTCCTCTCAGATGGCTCCAGCTTGTGTCAAGTTGACGTACA
ACTTGCTGGCACATTGGGTTAGCTTTGTCTAAGGTGCTCCGAATGGTCAA
ATGCAGGGAGAAGGAAACTGGAACAGTGACTACCAGACTCTGAGGAGGGA
AGGCAGTGGGAGGTGGTGGTCCTCGGCACACTGTTTCAGTCTGAGGTGAG
GAGCTCTGTCTCTGCAGTTGGATCTGGGCCAGGGCTGACAGTANTGTGCA
AGTGCTCAGACAGGGAGCACAGACAAGTCCTGCAGTGTGGGAAGCTAATG
CTGTTCTTTGTGCCTGCTTTGGTTTTTTTTTTTTTTTTGAAATTGAACCC
AGGCCTTATCATGAA
GAGGAGAGGGAGGGACGCTATTCGGCGGGGGAGGGGCCGGCGGGGGGCCA
GCGCCGGGGGAGCCAACGGAGAGCGAGAGAACATAGCACCCAACGGGAGA
AACGCAAAGGGGCGGGAGGGAAGGGGGTCCACAGGACGCCCAAAAAAAAA
CAAGACNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAAGANNGGGGAGGGG
GGGGGGNNNNGNNNTAGNNNGGGGGGNNCCTAGGGGNNNNNGGGACAGAA
GGGAGCGGGGGCCCGGCGTTACTTTAGGACACAAGAAGACGCGGATCCCA
CCCCCATTACAAGGAAGACCAGACAGGAACAGAGCCAAAGAACCCACCAG
GGCAGGCCGGATCACGGGAGGCATTGCCTGGGGACGCCGGGCAAAGGCCC
TTCCGGAAACCGGGAAAACCGGCCGGGAAAAAAAAAGGGCCAAAGGGGGG
TCCCCCAGGGGGGGGGGGGCCCCCCGAAAAACCCCCCCCGGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no524_m03.b1 MSMg01no524_m03.b1 CHROMAT_FILE:
MSMg01no524_m03.b1 PHD_FILE: MSMg01no524_m03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:07 2005
         (605 letters)



>mm_chr11_4882420_4883422
          Length = 1003

 Score = 1046 bits (541), Expect = 0.0
 Identities = 583/603 (96%), Gaps = 14/603 (2%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaaatgaggcaggaacctagaggctggagcgaggcagggaggggctg-ctttct 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 214 ggaattcaaatgaggcaggaacctagaggctggagcgaggcagggaggggctggctttct 273

                                                                       
Query: 63  tatagcacccagggccatcagcctagggatggcactgctcacaatcactgattaagaaac 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 tatagcacccagggccatcagcctagggatggcactgctcacaatcactgattaagaaac 333

                                                                       
Query: 123 tgacctgccgggtgtggtggcgcacgcctttaatcacagcactcgggaggcagaggcagg 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tgacctgccgggtgtggtggcgcacgcctttaatcacagcactcgggaggcagaggcagg 393

                                                                       
Query: 183 tggatttctgagttcgaggccagcctggtctacagagtgagttccaggacagccagggct 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tggatttctgagttcgaggccagcctggtctacagagtgagttccaggacagccagggct 453

                                                                       
Query: 243 acacagagaaattctgtctcaaaaaaccaaaaaaaaaaaaaaaaaaaaaaaagaaagaaa 302
           || ||||||||| ||||||| ||||||||||||||||||||||||       ||||   |
Sbjct: 454 actcagagaaatcctgtctcgaaaaaccaaaaaaaaaaaaaaaaa-------gaaa---a 503

                                                                       
Query: 303 gaaagaaaagaaactgtcctacatgcctgcctacagctccagcttatggggacactttct 362
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gaaa-aaaagaaactgtcctacatgcctgcctacagctccagcttatggggacactttct 562

                                                                       
Query: 363 caactgagagtccctcctctcagatggctccagcttgtgtcaagttgacgtacaacttgc 422
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 563 caactgagagtccctcctctcagatggctccagcttgtgtcaagttgatgtacaacttgc 622

                                                                       
Query: 423 tggcacattgggttagctttgtctaaggtgctccgaatggtcaaatgcagggagaaggaa 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tggcacattgggttagctttgtctaaggtgctccgaatggtcaaatgcagggagaaggaa 682

                                                                       
Query: 483 actggaacagtgactaccagactctgaggagggaaggcagtgggaggtggtggtcctcgg 542
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 683 actggaacagtgactaccagactctgaggagggaaggcagtgggaggtgttggtcctcgg 742

                                                                       
Query: 543 cacactgtttcagtctgaggtgaggagctctgtctctgcagttggatctgggccagggct 602
           |||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||
Sbjct: 743 cacactgtttcagtctgaggtgaggaact--gtctctgcagttggatctgggccagggct 800

              
Query: 603 gac 605
           |||
Sbjct: 801 gac 803


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1003
Length adjustment: 10
Effective length of query: 595
Effective length of database: 993
Effective search space:   590835
Effective search space used:   590835
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)