BAC Information

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BAC

Clone NameMSMg01-524N08
Chromosome11 (Build37)
Map Location 105,800,277 - 105,800,821
singlet/doubletsinglet
Overlap geneCyb561
Upstream geneLOC276809, LOC100041125, 4921510J17Rik, Mettl2, LOC666771, Tlk2, 1700052K11Rik, Mrc2, Rnf190, EG666807, Tanc2, LOC667737
Downstream geneAce, EG217246, Kcnh6, Wdr68, Ccdc44, Map3k3, Limd2, 2610019A05Rik, 2610204L23Rik, Ddx42, Ftsj3, Psmc5, Smarcd2, Tcam1, Gh, Cd79b, Scn4a, 2310007L24Rik, Icam2, Ern1, LOC100041277, Tex2, Pecam1, Gm885, Polg2, Ddx5, Ccdc45, Smurf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-524N08.T7 (MSMg01no524_n08.b1)MSMg01-524N08.TJ (MSMg01no524_n08.g1)
ACCAG594817AG594818
length773768
length of high quality
(start - end)		564 (34 - 597)561 (64 - 624)
definitionCHROMAT_FILE: MSMg01no524_n08.b1 PHD_FILE: MSMg01no524_n08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:59:13 2005CHROMAT_FILE: MSMg01no524_n08.g1 PHD_FILE: MSMg01no524_n08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:59:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCAACTG
AGGAATACTGAATGGCCGAGAAGCACCTGAAAAAATGTTCAACATCCTTA
ATCATCAGGGAAATGCAAATCAAAACAACCATGAGACAGAATGGCTAAGA
TCAAAAACTCAGGTGACAGCAGATGCTGGTGAGGATGTGGAGAAAAAGGA
ACACTCCTCCATTTCTGGTGGGATTCCGAGCTGGTACAGCCACTCTAGAA
ATCAGTTTGGTGGTTTCTCAGAAAATTGGACATAGTTCTACCGGAAGGTC
CAGCAATACCACTCCTGGGCATATACCCAGAAGATGCTCCAACCTGTAAT
AGGACACATGCTCCACTATGTTCATAGTATTCTTTTTTTTATTAGATATT
TTCTTCATTTACATTTCCAATGCTATCCCAAAAGTCCCCTATATCCTCCC
CCTTGTCCTGCTCCCCTACCCACTCACTCCCACTTCTTGGCCCTGGCGTT
CCCCTGTACTGGGGCATATAAAATTTGCAAGACCAAGGGGCCTCTCTTCC
CAATGATAGCCGACTAGGCCATCTTCTGCTACATATGCAGTTAGAGACTG
AGGCTCTGGGGGTACTGGTTAGTTCATATTGTTGTTTCACCTATAGGGTT
GCAGACCCCTTTCACTTCTTGGGTATTTCTCTAGCTCCCTCCTTTGGGGG
CCTGTGTTCATCCCATAAGTTCCTAGGATTCTCTATTTTATAGTAGAGAA
CCTGAAAGAACCCCTAAGTCAGC

TGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXAGAAACAGGAGTTTACTCTTGGCCAGGGCTTCAGACA
GAATTCCCACACGACAGGGGTAGCATGAAAGAAAATGTCAAGAATTTGAG
AAAGGGGCTAGCCTGGGTTCATATCAGCCTCCGAGTAGTGCGTATTCCGT
GAATGTCGAGAACCAGTCTCCTGAATATTTAGGGTAGGACGGCAGAGCCC
GCTGGCAGGAGGTTGGGGCTCAGCTAGAGACCTACAGTGCAGTAGTGTGG
AGTTACTGAACCGCTGAGGCAGAAGTGTGTTGATGTACGTGCTAGGCCTG
CGCGTGAGGATGGGTTAGCAGATGCATGGGGCTGTTTCTACAAAAAAAAA
AAAAAAAAGTATGTGGCTGTCAGACAGAACCCGCGAGGATGCGGAGGGCT
TGCTTTGTCTGTTTTCGGAGAGTGTATTATTAACTGCCTTGGTCCTCTTT
TCAAATGGAGGCGTTGCTGTCAGAGAATTGGGAGGTGGAGCTGGAGCTGA
TCAACTGGAGGAGCTGGGGACGCAGGCCCAAGCACAGCTGGGCCAGCACG
GGCTCTAGCTAGGGTGGGGAAGTGGCTGCCACAGCTCCTGTTGGCTGCTG
CGTACATCTTCTGGTGCTCACTGCTGCTGGGAAAAACAGTTGGCTGCGGA
AGACAATCCTGCCTGCCTGTCTAGGGAAAGGGACAGTACCTGGAGCTCTG
ATGTCTCTGGGCTGGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no524_n08.g1 MSMg01no524_n08.g1 CHROMAT_FILE:
MSMg01no524_n08.g1 PHD_FILE: MSMg01no524_n08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:13 2005
         (561 letters)



>mm_chr11_105800277_105801237
          Length = 961

 Score =  977 bits (505), Expect = 0.0
 Identities = 530/545 (97%), Gaps = 11/545 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaaacaggagtttactcttggccagggcttcagacagaattcccacacgacaggggtag 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 545 agaaacaggagtttactcttggccagggcttcagaaagaattcccacacgacaggggtag 486

                                                                       
Query: 61  catgaaagaaaatgtcaagaatttgagaaaggggctagcctgggttcatatcagcctccg 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 485 catgaaagaaaatgtcaagaatttgagaaaggggctagcctgggttcataccagcctccg 426

                                                                       
Query: 121 agtagtgcgtattccgtgaatgtcgagaaccagtctcctgaatatttagggtaggacggc 180
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 425 agtagtgcgtattccgtgaatgtcgagaaccagtctcctgaatattcagggtaggacggc 366

                                                                       
Query: 181 agagcccgctggcaggaggttggggctcagctagagacctacagtgcagtagtgtggagt 240
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 365 agagcccgctggcaggaggtcggggctcagctagagacctacagtgcagtagtgtggagt 306

                                                                       
Query: 241 tactgaaccgctgaggcagaagtgtgttgatgtacgtgctaggcctgcgcgtgaggatgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tactgaaccgctgaggcagaagtgtgttgatgtacgtgctaggcctgcgcgtgaggatgg 246

                                                                       
Query: 301 gttagcagatgcatggggctgtttctac-----------aaaaaaaaaaaaaaaaagtat 349
           ||||||||||||||||||||||||||||           |||||||||||||||||||||
Sbjct: 245 gttagcagatgcatggggctgtttctacaaaaaaaaaaaaaaaaaaaaaaaaaaaagtat 186

                                                                       
Query: 350 gtggctgtcagacagaacccgcgaggatgcggagggcttgctttgtctgttttcggagag 409
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 gtggctgtcagacagaacccgcgaggatgcggagggcttgctttgtctgttttcggagag 126

                                                                       
Query: 410 tgtattattaactgccttggtcctcttttcaaatggaggcgttgctgtcagagaattggg 469
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 tgtattattaactgccttggtcctcttttcaaatggaggcgttgctgtcagagaattggg 66

                                                                       
Query: 470 aggtggagctggagctgatcaactggaggagctggggacgcaggcccaagcacagctggg 529
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65  aggtggagctggagctgatcaactggaggagctggggacgcaggcccaagcacagctggg 6

                
Query: 530 ccagc 534
           |||||
Sbjct: 5   ccagc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space:   524001
Effective search space used:   524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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