Query= MSMg01no525_a18.b1 MSMg01no525_a18.b1 CHROMAT_FILE:
MSMg01no525_a18.b1 PHD_FILE: MSMg01no525_a18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:31 2005
(706 letters)
>mm_chr11_65689155_65690260
Length = 1106
Score = 1110 bits (574), Expect = 0.0
Identities = 589/594 (99%)
Strand = Plus / Minus
Query: 5 gaattcacttgctttttgtcactacaatgatatacctaacagtacaacttatggtatcaa 64
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 594 gaattcacttgctttttgtcactacaatgatatacctaacagcacaacttatggtatcaa 535
Query: 65 gaataattttggttcatgttggtataggactcaggtcgtcaggatagggaaggtgtgagg 124
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 534 gaataattttggttcatgttggtataggactcaggtcatcaggatagggaaggtgtgagg 475
Query: 125 gacagctcaattttcagtgtagtagaccagaaagcaagaccaaaggtggtcagggataat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 gacagctcaattttcagtgtagtagaccagaaagcaagaccaaaggtggtcagggataat 415
Query: 185 atacccataaatatccactcctagtggcctttctccagctagccctttcctcaagtttcc 244
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 414 atacccataaatatccactcctagtgacctttctccagctagccctttcctcaagtttcc 355
Query: 245 aaaataatggctacaagctggggattaagcattaaaaataaatgctatatttaaaccata 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 aaaataatggctacaagctggggattaagcattaaaaataaatgctatatttaaaccata 295
Query: 305 acacccacccaatatttcaatatcaagactagtgataccatagacacattaagaaggcat 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 acacccacccaatatttcaatatcaagactagtgataccatagacacattaagaaggcat 235
Query: 365 agtaagatttactactcttagctcacactgaaatggactgtctatagcacatccgttacc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 agtaagatttactactcttagctcacactgaaatggactgtctatagcacatccgttacc 175
Query: 425 tcaatggtcagggatcttaacagaattaacggaaagatcttaagggccaggggaaatgtt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 tcaatggtcagggatcttaacagaattaacggaaagatcttaagggccaggggaaatgtt 115
Query: 485 gaataatggcaaatagtgttttctggacacagcaggtcagctgtgcataggaactcacag 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114 gaataatggcaaatagtgttttctggacacagcaggtcagctgtgcataggaactcacag 55
Query: 545 ctactgtggcaacatgcacaaggcctatgtcggcttggccagacaaagccccag 598
| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54 cgactgtggcagcatgcacaaggcctatgtcggcttggccagacaaagccccag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 706
Length of database: 1106
Length adjustment: 10
Effective length of query: 696
Effective length of database: 1096
Effective search space: 762816
Effective search space used: 762816
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no525_a18.g1 MSMg01no525_a18.g1 CHROMAT_FILE:
MSMg01no525_a18.g1 PHD_FILE: MSMg01no525_a18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:31 2005
(684 letters)
>mm_chr11_65532020_65533104
Length = 1085
Score = 1052 bits (544), Expect = 0.0
Identities = 671/766 (87%), Gaps = 83/766 (10%)
Strand = Plus / Plus
Query: 1 ttttgtaaagaatgaaattacagcctacacaagaaaagtggataaaactggataatcata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttttgtaaagaatgaaattacagcctacacaagaaaagtggataaaactggataatcata 180
Query: 61 tgacgcaaaatgagccagattcagaaggcaaaggctgcatattttttgccacacataaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tgacgcaaaatgagccagattcagaaggcaaaggctgcatattttttgccacacataaaa 240
Query: 121 gatagacagacagacactcgagcaca---------------------------------- 146
||||||||||||||||| ||||||||
Sbjct: 241 gatagacagacagacacgcgagcacatgcgcacaggcacacacaccacacactagaagta 300
Query: 147 -----------------------------------------gtgaa-----caggacaat 160
||||| |||||||||
Sbjct: 301 gaaaaggaacttagaggagaggaagaggtcgaaaggtaagggtgaagcgaacaggacaat 360
Query: 161 gtaatgagacactgacaggagaacagaaagagggacctttagaaaatggaaggtgatcag 220
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 361 gtaatgagacactgacaggagaacagaaagagggaccattagaaaatggaaggtgatcag 420
Query: 221 ccagaaggaggaagggaatgagggaaggacaggtgggtgggacaaaaaaagaacaaactg 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ccagaaggaggaagggaatgagggaaggacaggtgggtgggacaaaaaaagaacaaactg 480
Query: 281 gaatgaaatacacttataaaggaagctagtgggagaaaaggcaagggggaaagtgacaaa 340
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 481 taatgaaatacacttataaaggaggctagtgggaggaaaggcaagggggaaagtgacaaa 540
Query: 341 gtctattttagttaaaatgtattttttaaaaaccataacacacatttcattactaaccaa 400
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gtctattttaggaaaaatgtattttttaaaaaccataacacacatttcattactaaccgc 600
Query: 401 ccccccc--caaattaaacaaaataattcttaaaaatctacattgaagtactgacacaga 458
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 cccccccaccaaattaaacaaaataattcttaaaaatctacattgaagtactgacacaga 660
Query: 459 gctgtgtcacatccttaatagaaaacataaaggaaaaaaaaaccaatggcagtcagaagc 518
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 661 gctgtgtcacatccttaatagaaaacataaaggaaaaaaaa-ccaatggcagtcagaagc 719
Query: 519 agcaaccacaaagacacagaaatatttacatatggatagatagatgttactataagaagc 578
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 720 agcaaccacaaagacacagaaatatttacatatggctagatagatgttactataagaagc 779
Query: 579 tttaagtctaaacttcagtggcattccaaaacaatcccaagcagaaagaacctgcaagtt 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 tttaagtctaaacttcagtggcattccaaaacaatcccaagcagaaagaacctgcaagtt 839
Query: 639 aacgaggatggttctgtactgtaacaagaggcaacgttgttattaa 684
|||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 840 aacgaggatggttctgtactataacaagaggcaactttgttattaa 885
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1085
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1075
Effective search space: 724550
Effective search space used: 724550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
