BAC Information

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BAC

Clone NameMSMg01-525A24
Chromosome11 (Build37)
Map Location 18,613,379 - 18,775,915
singlet/doubletdoublet
Overlap genenone
Upstream geneEtaa1, LOC327871, LOC627696, LOC627716, LOC665796
Downstream geneMeis1, LOC635455, LOC100042708, Glns-ps1, LOC665868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-525A24.T7 (MSMg01no525_a24.b1)MSMg01-525A24.TJ (MSMg01no525_a24.g1)
ACCAG594991AG594992
length756750
length of high quality
(start - end)		660 (36 - 695)481 (64 - 544)
definitionCHROMAT_FILE: MSMg01no525_a24.b1 PHD_FILE: MSMg01no525_a24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:59:32 2005CHROMAT_FILE: MSMg01no525_a24.g1 PHD_FILE: MSMg01no525_a24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:59:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,613,379 - 18,614,034)(18,775,435 - 18,775,915)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCATGT
AACTGTGCATTTCTTTCAGCTCCCCCTTCATAACTTCAAAGGATGGGATG
CCAGGAGCTGGTGTAATGATGTAAGATGAAGACTTACAGACTATGATGTA
AATGGACAGACCTTTCTCAGAAGTTTGGTTTACCAGCAGTTTGATTCACA
AATTAAGGCACATATGTTAGTATAGAATTGTTCTCTCCACCTTCATTAGA
AGTGTGTAACTTTCTTCCTTCTGGTGATAACTCATGTTTCACAATGTAGC
TGACTGTCTTTTTCCAAACGTCTGCTAGAGAAAGAAGGACCCAGGAAGGG
CCTGCTACTGTCAGGCATCTCTCTTTATTGAGTAACTGGCTCACACAACC
CAGCAATAGCCAACATATGTCTCTCTAACTCTTTCTGGTGCCTTTTCTCA
CTGCCATCAAGGGATCCTATTTCTCCATGCAGGCCACCCTAACAGGTCTT
GGAATGACAGAAAGAACAAGAAAAGTTGTTCTTTGCTCATGGCTTCAGAA
TTCAGCAGAAAACATAAGACCCAGTTCCAGTCCAGTGTTGACCAGGAAAT
GCTGCATGGGCCACATAGGCACTGTCAAGTATCCTAATGGCCACTCTAAA
TTAAATAAAGATGGAATAACTTGGGTTTTATATACATGCAACCCAGTGTG
GTTAAATAAATAAATAAATAAATAAAAATAATAATTAATTAATAATGCCA
TTTGTA

GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCGACTCTGAAACTCTGGATTTAGTTTTAATCCAGTCT
TCCTTTGATCAACTGTATAATTCCTAGCCCTGACCACCTCTACCCCACAC
TGTGTTCATTAGGACCAGTGACTTTATTCTCTGGGAGGAAAACTACTCCC
AGGTCCTAGCCCATTAGGAAAGCAGAGAGTAGAGTCACCTGCTTCATACA
CCTACGGGTCCTCTCCCCGGCGTCGTTTTTCTGGCTTGGCACCCTAGCTT
CAGGCAGAGTGTACCGGAGAGTTCAGGATCCCACTGTCTGCTTTCTCTGG
GTTGGAGATATGACTGAAAGACAGGATGGCCAACTCTCTGGCTCCCCTTC
TCTCCTCCCTTTCTTGCTTTTCTGCCTAGGCCTCCCTCACACCTCAGCAC
TTTTCTCTTCCACCACCCTAAAAGTGACAGGTTCTCCGAATTCACCTGAA
GACCCGAGGCTCTAACCTCTCCCAGTCCCCGCAGGCATTGGGGGTGGGGG
GGTGGGGGTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTN
NNNNNNNNNNTTTTTNNNNNNNTTTNTTTTTTTNTTTTTTTTTTTTTNTT
TTTTTTTNNNTTTTTTTNTTTTTTTTTTTNTTTTTNTNTTTTTTTTTTTN
TTTTTTTTTTTTNTTTTTTTTNNTTTTTTTCCNCTTNTTTTTTTTTNTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no525_a24.b1 MSMg01no525_a24.b1 CHROMAT_FILE:
MSMg01no525_a24.b1 PHD_FILE: MSMg01no525_a24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:32 2005
         (660 letters)



>mm_chr11_18613175_18614234
          Length = 1060

 Score = 1261 bits (652), Expect = 0.0
 Identities = 655/656 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccatgtaactgtgcatttctttcagctcccccttcataacttcaaaggatgggat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatgtaactgtgcatttctttcagctcccccttcataacttcaaaggatgggat 264

                                                                       
Query: 65  gccaggagctggtgtaatgatgtaagatgaagacttacagactatgatgtaaatggacag 124
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 265 gccaggagctggtgtaatgatgtaagatgaagaattacagactatgatgtaaatggacag 324

                                                                       
Query: 125 acctttctcagaagtttggtttaccagcagtttgattcacaaattaaggcacatatgtta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acctttctcagaagtttggtttaccagcagtttgattcacaaattaaggcacatatgtta 384

                                                                       
Query: 185 gtatagaattgttctctccaccttcattagaagtgtgtaactttcttccttctggtgata 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtatagaattgttctctccaccttcattagaagtgtgtaactttcttccttctggtgata 444

                                                                       
Query: 245 actcatgtttcacaatgtagctgactgtctttttccaaacgtctgctagagaaagaagga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 actcatgtttcacaatgtagctgactgtctttttccaaacgtctgctagagaaagaagga 504

                                                                       
Query: 305 cccaggaagggcctgctactgtcaggcatctctctttattgagtaactggctcacacaac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cccaggaagggcctgctactgtcaggcatctctctttattgagtaactggctcacacaac 564

                                                                       
Query: 365 ccagcaatagccaacatatgtctctctaactctttctggtgccttttctcactgccatca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ccagcaatagccaacatatgtctctctaactctttctggtgccttttctcactgccatca 624

                                                                       
Query: 425 agggatcctatttctccatgcaggccaccctaacaggtcttggaatgacagaaagaacaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 agggatcctatttctccatgcaggccaccctaacaggtcttggaatgacagaaagaacaa 684

                                                                       
Query: 485 gaaaagttgttctttgctcatggcttcagaattcagcagaaaacataagacccagttcca 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gaaaagttgttctttgctcatggcttcagaattcagcagaaaacataagacccagttcca 744

                                                                       
Query: 545 gtccagtgttgaccaggaaatgctgcatgggccacataggcactgtcaagtatcctaatg 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gtccagtgttgaccaggaaatgctgcatgggccacataggcactgtcaagtatcctaatg 804

                                                                   
Query: 605 gccactctaaattaaataaagatggaataacttgggttttatatacatgcaaccca 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 gccactctaaattaaataaagatggaataacttgggttttatatacatgcaaccca 860


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space:   682500
Effective search space used:   682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no525_a24.g1 MSMg01no525_a24.g1 CHROMAT_FILE:
MSMg01no525_a24.g1 PHD_FILE: MSMg01no525_a24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:32 2005
         (481 letters)



>mm_chr11_18775235_18776115
          Length = 881

 Score =  922 bits (477), Expect = 0.0
 Identities = 480/481 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cgactctgaaactctggatttagttttaatccagtcttcctttgatcaactgtataattc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cgactctgaaactctggatttagttttaatccagtcttcctttgatcaactgtataattc 622

                                                                       
Query: 61  ctagccctgaccacctctaccccacactgtgttcattaggaccagtgactttattctctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctagccctgaccacctctaccccacactgtgttcattaggaccagtgactttattctctg 562

                                                                       
Query: 121 ggaggaaaactactcccaggtcctagcccattaggaaagcagagagtagagtcacctgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggaggaaaactactcccaggtcctagcccattaggaaagcagagagtagagtcacctgct 502

                                                                       
Query: 181 tcatacacctacgggtcctctccccggcgtcgtttttctggcttggcaccctagcttcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcatacacctacgggtcctctccccggcgtcgtttttctggcttggcaccctagcttcag 442

                                                                       
Query: 241 gcagagtgtaccggagagttcaggatcccactgtctgctttctctgggttggagatatga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 441 gcagagtgtaccggagagttcaggatcccactgtctgctttctctgggttggagacatga 382

                                                                       
Query: 301 ctgaaagacaggatggccaactctctggctccccttctctcctccctttcttgcttttct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgaaagacaggatggccaactctctggctccccttctctcctccctttcttgcttttct 322

                                                                       
Query: 361 gcctaggcctccctcacacctcagcacttttctcttccaccaccctaaaagtgacaggtt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcctaggcctccctcacacctcagcacttttctcttccaccaccctaaaagtgacaggtt 262

                                                                       
Query: 421 ctccgaattcacctgaagacccgaggctctaacctctcccagtccccgcaggcattgggg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctccgaattcacctgaagacccgaggctctaacctctcccagtccccgcaggcattgggg 202

            
Query: 481 g 481
           |
Sbjct: 201 g 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space:   410241
Effective search space used:   410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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