XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGTGAT
TCTCATTACATATTTAAACTCATTTTGTTTGGAAAGTTGTTGGGCAGCAC
AAACAATAAATTGTTTTTCTCTATGGTATTGCCAGTCATAGACCATGATA
AAATGATGGGTGATGTAATTTCACATTCAAAACCACTGTTGTTTTTTAAT
GAAAAAAAATGTTATTTGATATCATTTTTAAAAAATGGAAGATTAGAGCT
TAGTGGAACTAACATATTTTAAAAGATAATCCTTGAAGAATACAGATATC
ATATTACTTGTTGAAGTTATTTGTAACTGAAGCTCATGTTTCTCTACGTA
TTTTTCCATTTTCTTTCAGTAGCTTAAAACCAATTTATAAGACAAAACTC
AATCTCGGTTCAGACTAAATATGTACGTATAAAATGTCATTAGTCTCTTT
TCATACAGTATTGTTGTAGAGATAATTTAAATACACAACAACATTAGAAG
AATATAATAGATATTTCTAACATATGCCCTGCTACAAGCCACACATGGCC
TCCCTTGATACCAATACATCAAAACAGACCAGTACAATCATAAGAAGATT
AAATTTCTTAAGACTTGTATATTTACAACTTTTGTTTGTTTGTTTAAAAA
AACAGTATTCTAACTTGAATGCTAAAATATTATGGCTTCTTAAATTTCAA
GGATATAAATAATTGTGTATGGGAAAATGAATGTTTGTGTAAGTCCAAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGT
TATTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGAT
ATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGT
TGGTTGTCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTT
GGAGTTTCATTAGGTCCCATTTGGAAATTCTCGATCTTACAGCACAAGCC
ATTGCTGTTCTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCT
TTTCCCCACTTTCTCCTCTATAAATTTCAGTGTCTCTGGTTTTATGTGAA
GTTTTTTTAGCCACTTAGATTTGACCTTAGTAAAAAGAGATAGGAATGGA
TCAATTCACATTCTTCTACAGGATAACAACCAGTTGTGCCAGCACCATTT
GTTATAAATGCTGTCTTTCTTCCACTGGATTTTTTTAGCTCCCTTGTCAA
ACATCAAGTGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTA
TTCCATTGGTCTACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTAT
CACAATTGCTCTGTAGTAAAGCTTTAGGTCTGGCATGGTGATTCCACCAG
AAGTTCTTTTATCCTTGAGAAGACTTTTTGCTATCCTAGGTTTTTTGTTA

Query= MSMg01no525_b16.b1 MSMg01no525_b16.b1 CHROMAT_FILE:
MSMg01no525_b16.b1 PHD_FILE: MSMg01no525_b16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:59:35 2005
         (680 letters)



>mm_chr11_40990102_40991187
          Length = 1086

 Score = 1201 bits (621), Expect = 0.0
 Identities = 665/683 (97%), Gaps = 8/683 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagtgattctcattacatatttaaactcat----tttgtttggaaagttgttggg 60
           |||||||||||| ||||||||||||||||||||||    |||||||||||||||||||||
Sbjct: 886 gaattcagtgatactcattacatatttaaactcattttgtttgtttggaaagttgttggg 827

                                                                       
Query: 61  cagcacaaacaataaattgtttttctctatggtattgccagtcatagaccatgataaaat 120
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 826 cagcacaaacaataaattgtttttccctatggtattgccagtcatagaccatgataaaat 767

                                                                       
Query: 121 gatgggtgatgtaatttcacattcaaaaccactgttgttttttaatgaaaaaaaatgtta 180
           ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 766 gatgggtgatgtactttcacattcaaaaccactgttgttttttaatg-aaaaaaatgtta 708

                                                                       
Query: 181 tttgat---atcatttttaaaaaatggaagattagagcttagtggaactaacatatttta 237
           ||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 tttgatatcatcatttttaaaaaatggaagattagagcttagtggaactaacatatttta 648

                                                                       
Query: 238 aaagataatccttgaagaatacagatatcatattacttgttgaagttatttgtaactgaa 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 aaagataatccttgaagaatacagatatcatattacttgttgaagttatttgtaactgaa 588

                                                                       
Query: 298 gctcatgtttctctacgtatttttccattttctttcagtagcttaaaaccaatttataag 357
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 gctcatgtttctctacatatttttccattttctttcagtagcttaaaaccaatttataag 528

                                                                       
Query: 358 acaaaactcaatctcggttcagactaaatatgtacgtataaaatgtcattagtctctttt 417
           || ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 527 acgaaactcaatctaggttcagactaaatttgtacatataaaatgtcattagtctctttt 468

                                                                       
Query: 418 catacagtattgttgtagagataatttaaatacacaacaacattagaagaatataataga 477
           ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 467 catactgtattgttgtagagataatttaaatacacaaaaacattagaagaatataataga 408

                                                                       
Query: 478 tatttctaacatatgccctgctacaagccacacatggcctcccttgataccaatacatca 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 tatttctaacatatgccctgctacaagccacacatggcctcccttgataccaatacatca 348

                                                                       
Query: 538 aaacagaccagtacaatcataagaagattaaatttcttaagacttgtatatttacaactt 597
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 aaacagaccagtacaatcataagaagattaaatttcttaagacttgtatatttacaactt 288

                                                                       
Query: 598 ttgtttgtttgtttaaaaaaacagtattctaacttgaatgctaaaatattatggcttctt 657
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 ttgtttgtttgtttaaaaaaacagtattctaacttgaatgctaaaatattatggcttctt 228

                                  
Query: 658 aaatttcaaggatataaataatt 680
           |||||||||||||||||||||||
Sbjct: 227 aaatttcaaggatataaataatt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1086
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1076
Effective search space:   720920
Effective search space used:   720920
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)