Query= MSMg01no525_j24.b1 MSMg01no525_j24.b1 CHROMAT_FILE:
MSMg01no525_j24.b1 PHD_FILE: MSMg01no525_j24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:18 2005
(642 letters)
>mm_chr11_69267213_69268253
Length = 1041
Score = 799 bits (413), Expect = 0.0
Identities = 437/451 (96%), Gaps = 11/451 (2%)
Strand = Plus / Minus
Query: 202 taaggaaataggattcaccgggcagtggtggtgcacgcctttaatcctagcacttgggag 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1041 taaggaaataggattcaccgggcagtggtggtgcacgcctttaatcctagcacttgggag 982
Query: 262 gcagaggcaggcggatttctgatttcaaggctagcctggtctacagagtgagttccagga 321
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 981 gcagaggcaggcggatttctgagttcaaggctagcctggtctacagagtgagttccagga 922
Query: 322 cagccagggctacacagagaaaccctgtctcgaaaaacaaaacaca----------aaaa 371
|||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 921 cagccagggctacacagagaaaccctgtctcgaaaaacaaaacacaaaaacaaaacaaaa 862
Query: 372 caaaacaaaacaaaacaaaaaaagaaaatagggttccacagcaaagcacatgcctaaagt 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 caaaacaaaacaaaacaaaaaaagaaaatagggttccacagcaaagcacatgcctaaagt 802
Query: 432 cactctgctgaaatgccacacattctgctcttgccttcggatcttctgcaaagaaactct 491
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 cagtctgctgaaatgccacacattctgctcttgccttcggatcttctgcaaagaaactct 742
Query: 492 ttcctccctctacttcaatgactgcttcaaccttccaggtcttccagggcatgcttagag 551
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 741 ttcctccctctacttcaatgactgcttcaactttccaggtcttccagggcatgcttagag 682
Query: 552 ccaacaaggactttcatgataccaaagccagcatcaccaagactctggattcatgagtgt 611
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 681 ccaacaaggactttcatgataccaaagccagcatca-caagactctggattcatgagtgt 623
Query: 612 ttcaggtgacatgtctgggtgtcctggccag 642
|||||||||||||||||||||||||||||||
Sbjct: 622 ttcaggtgacatgtctgggtgtcctggccag 592
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1041
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1031
Effective search space: 651592
Effective search space used: 651592
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no525_j24.g1 MSMg01no525_j24.g1 CHROMAT_FILE:
MSMg01no525_j24.g1 PHD_FILE: MSMg01no525_j24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:18 2005
(577 letters)
>mm_chr11_69124193_69125169
Length = 977
Score = 1073 bits (555), Expect = 0.0
Identities = 574/585 (98%), Gaps = 8/585 (1%)
Strand = Plus / Plus
Query: 1 aaagccagtctggcctacatagtgagaccctgtctttaaagaaaacacacacaccccgca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 aaagccagtctggcctacatagtgagaccctgtctttaaagaaaacacacacaccccgca 252
Query: 61 aaaacaaacaaacaaacaaacaaa--------atagaagcacttccagaaatcatggtga 112
|||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 253 aaaacaaacaaacaaacaaacaaacaaacaaaatagaagcacttccagaaatcatggtga 312
Query: 113 aggaggatgagagaaagctggggttgaaggagaacactcctggagcagctgtgaacaaca 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 aggaggatgagagaaagctggggttgaaggagaacactcctggagcagctgtgaacaaca 372
Query: 173 cacttctgcattgttccaaaaggagctggaaacagcattcatctttccatccctcagggc 232
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 373 cacttctgcattgttccaaaaggagctggaaacagcattcatctttctatccctcagggc 432
Query: 233 agctgccccacgggagggaaatctctaggctgtgtgcctgtccataagcacttcgtggca 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 agctgccccacgggagggaaatctctaggctgtgtgcctgtccataagcacttcgtggca 492
Query: 293 accctcccgagagggcctgagaccttaacagacaggactggaagtacgctgggagtcagg 352
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 493 accctcccgagagggcctgagaccttaacagacaggactggaagtacaccgggagtcagg 552
Query: 353 ccgggagaggctaagaggctctgagcacaagggcaggaagctaataacacttgctgctgc 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 ccgggagaggctaagaggctctgagcacaagggcaggaagctaataacacttgctgctgc 612
Query: 413 cagagaaacactatctagtaagttccaagtacctgtgatggtccctgagggaggcggcct 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 cagagaaacactatctagtaagttccaagtacctgtgatggtccctgagggaggcggcct 672
Query: 473 gccgcaggctgttctcctgagcctctgccagccgctcagtcacccgctgctccagctgta 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 gccgcaggctgttctcctgagcctctgccagccgctcagtcacccgctgctccagctgta 732
Query: 533 cagccagctctgactccatctggatccgctggctctcatatctgg 577
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 cagccagctctgactccatctggatccgctggctctcatatctgg 777
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space: 548289
Effective search space used: 548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
