MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-525P22
Chromosome	11 (Build37)
Map Location	23,004,307 - 23,004,834
singlet/doublet	singlet
Overlap gene	none
Upstream gene	Ehbp1, LOC100042146, Tmem17, LOC100042827, LOC100042846, LOC666078, B3gnt2, 9130230N09Rik, Commd1, Zrsr1, Cct4, 4930430E16Rik, LOC100042875
Downstream gene	Xpo1, LOC100042202, Ahsa2, 1700093K21Rik, A730027B03Rik, 0610010F05Rik, Pex13, 4933435A13Rik, Rel, Papolg, A830031A19Rik, LOC100042256, Bcl11a
Link	Open Mouse BAC browser

Click to get alignment info.

name	Ehbp1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:216565 MGI:2667252
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042146 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042146
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 Proteins pseudo : _no_value

name	Tmem17 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:103765 MGI:2144205
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042827 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042827
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs

name	LOC100042846 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042846
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 8 Proteins pseudo : _no_value

name	LOC666078 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666078
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 7 Proteins pseudo : _no_value

name	B3gnt2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:53625 MGI:1889505
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	9130230N09Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:77671 MGI:1924921
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 11 ESTs

name	Commd1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17846 MGI:109474
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Zrsr1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22183 MGI:98885
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cct4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12464 MGI:104689
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4930430E16Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:73873 MGI:1921123
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042875 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042875
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs

name	Xpo1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:103573 MGI:2144013
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	LOC100042202 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042202
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 3 ESTs

name	Ahsa2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:268390 MGI:1916133
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1700093K21Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67358 MGI:1914608
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	A730027B03Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:319301 MGI:2441821
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 93 ESTs, 1 Protein

name	0610010F05Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71675 MGI:1918925
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pex13 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72129 MGI:1919379
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4933435A13Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74467 MGI:1921717
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 3 mRNAs

name	Rel (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19696 MGI:97897
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Papolg (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:216578 MGI:2442119
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	A830031A19Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:268391 MGI:2685508
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST

name	LOC100042256 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042256
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs

name	Bcl11a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14025 MGI:106190
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ehbp1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:23346488 GeneID:216565 MGI:2667252
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : EH domain binding protein 1 transcript_id : NM_153078.1

name	Tmem17 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142368666 GeneID:103765 MGI:2144205
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transmembrane protein 17 transcript_id : NM_153596.2

name	LOC100042827 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149261678 GeneID:100042827
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs product : hypothetical protein LOC100042827 transcript_id : XM_001479472.1

name	B3gnt2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:34328452 GeneID:53625 MGI:1889505
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 transcript_id : NM_016888.4

name	9130230N09Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149261681 GeneID:77671 MGI:1924921
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 11 ESTs product : RIKEN cDNA 9130230N09 gene transcript_id : XM_986326.2

name	Commd1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84452160 GeneID:17846 MGI:109474
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : COMM domain containing 1 transcript_id : NM_144514.2

name	Zrsr1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118442835 GeneID:22183 MGI:98885
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1 transcript_id : NM_011663.2

name	Cct4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6753321 GeneID:12464 MGI:104689
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : chaperonin subunit 4 (delta) transcript_id : NM_009837.1

name	4930430E16Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:39930452 GeneID:73873 MGI:1921123
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4930430E16 gene transcript_id : NM_028672.1

name	LOC100042875 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149261682 GeneID:100042875
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs product : hypothetical protein LOC100042875 transcript_id : XM_001479561.1

name	Xpo1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:78190505 GeneID:103573 MGI:2144013
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : exportin 1, CRM1 homolog (yeast) transcript_id : NM_134014.3

name	Xpo1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:78190506 GeneID:103573 MGI:2144013
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : exportin 1, CRM1 homolog (yeast) transcript_id : NM_001035226.1

name	LOC100042202 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149261637 GeneID:100042202
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 3 ESTs product : hypothetical protein LOC100042202 transcript_id : XM_001477716.1

name	Ahsa2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:62530187 GeneID:268390 MGI:1916133
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : AHA1, activator of heat shock protein ATPase homolog 2 (yeast) transcript_id : NM_172391.3

name	1700093K21Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40254497 GeneID:67358 MGI:1914608
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1700093K21 gene transcript_id : NM_026105.2

name	0610010F05Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:117956374 GeneID:71675 MGI:1918925
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 0610010F05 gene transcript_id : NM_027860.2

name	Pex13 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802876 GeneID:72129 MGI:1919379
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : peroxisomal biogenesis factor 13 transcript_id : NM_023651.3

name	4933435A13Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:75991712 GeneID:74467 MGI:1921717
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4933435A13 gene transcript_id : NM_028956.4

name	4933435A13Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:75991713 GeneID:74467 MGI:1921717
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4933435A13 gene transcript_id : NM_001033654.2

name	4933435A13Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:75905501 GeneID:74467 MGI:1921717
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4933435A13 gene transcript_id : NM_028304.2

name	Rel (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:112181203 GeneID:19696 MGI:97897
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : reticuloendotheliosis oncogene transcript_id : NM_009044.2

name	Papolg (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:27369777 GeneID:216578 MGI:2442119
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : poly(A) polymerase gamma transcript_id : NM_172555.1

name	LOC100042256 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149261643 GeneID:100042256
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs product : hypothetical protein LOC100042256 transcript_id : XM_001477822.1

name	Bcl11a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118131099 GeneID:14025 MGI:106190
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : B-cell CLL/lymphoma 11A (zinc finger protein) transcript_id : NM_016707.2

name	Ehbp1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:23346489 CCDS:CCDS24469.1 GeneID:216565 MGI:2667252
definition	GO_function : GO:0005515 - protein binding [Evidence IPI] codon_start : 1 exception : mismatches in translation note : KIAA0903-like; DNA sequence AF424697 product : EH domain binding protein 1 protein_id : NP_694718.1

name	Tmem17 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:23956402 CCDS:CCDS24470.1 GeneID:103765 MGI:2144205
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA] codon_start : 1 product : transmembrane protein 17 protein_id : NP_705824.1

name	LOC100042827 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149261679 GeneID:100042827
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001479522.1

name	B3gnt2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31542175 CCDS:CCDS24471.1 GeneID:53625 MGI:1889505
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA] GO_function : GO:0030145 - manganese ion binding [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA] GO_process : GO:0007411 - axon guidance [Evidence IMP]; GO:0006486 - protein amino acid glycosylation [Evidence IMP]; GO:0007608 - sensory perception of smell [Evidence IMP] codon_start : 1 note : beta-1,3-N-acetylglucosaminyltransferase; beta-1,3-N-acetylglucosaminyltransferase 1; UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 6 product : UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1 protein_id : NP_058584.3

name	9130230N09Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94389916 GeneID:77671 MGI:1924921
definition	codon_start : 1 product : hypothetical protein LOC77671 protein_id : XP_991420.1

name	Commd1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84452161 CCDS:CCDS24472.1 GeneID:17846 MGI:109474
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0030529 - ribonucleoprotein complex [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence ISS]; GO:0019871 - sodium channel inhibitor activity [Evidence ISS]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006878 - copper ion homeostasis [Evidence ISS] codon_start : 1 note : U2af1-rs1 region 1; copper metabolism domain containing 1 product : COMM domain containing 1 protein_id : NP_653097.2

name	Zrsr1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755917 GeneID:22183 MGI:98885
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0030529 - ribonucleoprotein complex [Evidence IEA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 note : U2 small nuclear ribonucleoprotein auxiliary factor (U2AF), 35 kDa, related sequence 1; U2 small nuclear ribonucleoprotein auxiliary factor (U2AF), related sequence 1 product : U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1, related sequence 1 protein_id : NP_035793.1

name	Cct4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753322 CCDS:CCDS24474.1 GeneID:12464 MGI:104689
definition	GO_component : GO:0005832 - chaperonin-containing T-complex [Evidence IDA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0051082 - unfolded protein binding [Evidence IEA] GO_process : GO:0044267 - cellular protein metabolism [Evidence IEA]; GO:0006457 - protein folding [Evidence IEA] codon_start : 1 function : CCT is a molecular chaperone which assists the folding of proteins in eukaryotic cytosol note : TCP-1 delta; T complex protein 1, delta product : chaperonin subunit 4 (delta) protein_id : NP_033967.1

name	4930430E16Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:39930453 GeneID:73873 MGI:1921123
definition	codon_start : 1 product : hypothetical protein LOC73873 protein_id : NP_082948.1

name	LOC100042875 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149261683 GeneID:100042875
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001479611.1

name	Xpo1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:78190507 CCDS:CCDS24475.1 GeneID:103573 MGI:2144013
definition	GO_component : GO:0005737 - cytoplasm [Evidence IEA]; GO:0005643 - nuclear pore [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0008565 - protein transporter activity [Evidence IDA]; GO:0003723 - RNA binding [Evidence IEA] GO_process : GO:0006406 - mRNA export from nucleus [Evidence IEA]; GO:0006397 - mRNA processing [Evidence IEA]; GO:0006611 - protein export from nucleus [Evidence IDA]; GO:0000059 - protein import into nucleus, docking [Evidence IEA]; GO:0015031 - protein transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : exportin 1, CRM1 homolog protein_id : NP_001030303.1

name	Xpo1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:38604071 CCDS:CCDS24475.1 GeneID:103573 MGI:2144013
definition	GO_component : GO:0005737 - cytoplasm [Evidence IEA]; GO:0005643 - nuclear pore [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0008565 - protein transporter activity [Evidence IDA]; GO:0003723 - RNA binding [Evidence IEA] GO_process : GO:0006406 - mRNA export from nucleus [Evidence IEA]; GO:0006397 - mRNA processing [Evidence IEA]; GO:0006611 - protein export from nucleus [Evidence IDA]; GO:0000059 - protein import into nucleus, docking [Evidence IEA]; GO:0015031 - protein transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : exportin 1, CRM1 homolog protein_id : NP_598775.2

name	LOC100042202 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149261638 GeneID:100042202
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001477766.1

name	Ahsa2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:62530188 CCDS:CCDS24476.1 GeneID:268390 MGI:1916133
definition	GO_process : GO:0006457 - protein folding [Evidence IEA]; GO:0006986 - response to unfolded protein [Evidence IEA] codon_start : 1 product : RIKEN cDNA 1110064P04 protein_id : NP_765979.3

name	1700093K21Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40254498 CCDS:CCDS24477.1 GeneID:67358 MGI:1914608
definition	codon_start : 1 product : hypothetical protein LOC67358 protein_id : NP_080381.2

name	0610010F05Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:117956375 GeneID:71675 MGI:1918925
definition	codon_start : 1 product : hypothetical protein LOC71675 protein_id : NP_082136.2

name	Pex13 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31543471 CCDS:CCDS24478.1 GeneID:72129 MGI:1919379
definition	GO_component : GO:0016020 - membrane [Evidence IEA]; GO:0005777 - peroxisome [Evidence IDA] GO_function : GO:0000268 - peroxisome targeting sequence binding [Evidence TAS] GO_process : GO:0016560 - protein import into peroxisome matrix, docking [Evidence IEA]; GO:0006625 - protein targeting to peroxisome [Evidence TAS] codon_start : 1 product : peroxisomal biogenesis factor 13 protein_id : NP_076140.2

name	4933435A13Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:75905504 CCDS:CCDS24479.1 GeneID:74467 MGI:1921717
definition	codon_start : 1 product : hypothetical protein LOC74467 protein_id : NP_001028826.1

name	4933435A13Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:68342034 CCDS:CCDS24479.1 GeneID:74467 MGI:1921717
definition	codon_start : 1 product : hypothetical protein LOC74467 protein_id : NP_082580.1

name	4933435A13Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21312770 CCDS:CCDS24479.1 GeneID:74467 MGI:1921717
definition	codon_start : 1 product : hypothetical protein LOC74467 protein_id : NP_083232.1

name	Rel (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:112181204 CCDS:CCDS24480.1 GeneID:19696 MGI:97897
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IC] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0003700 - transcription factor activity [Evidence IDA] GO_process : GO:0050875 - cellular physiological process [Evidence IEA]; GO:0001816 - cytokine production [Evidence IMP]; GO:0045084 - positive regulation of interleukin-12 biosynthesis [Evidence IDA]; GO:0045893 - positive regulation of transcription, DNA-dependent [Evidence IDA]; GO:0000074 - regulation of progression through cell cycle [Evidence IEA]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : reticuloendotheliosis oncogene protein_id : NP_033070.2

name	Papolg (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27369778 CCDS:CCDS24481.1 GeneID:216578 MGI:2442119
definition	GO_function : GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] codon_start : 1 exception : mismatches in translation note : SRP 3'-adenylating protein product : poly(A) polymerase gamma protein_id : NP_766143.1

name	LOC100042256 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149261644 GeneID:100042256
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001477872.1

name	Bcl11a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7710022 CCDS:CCDS24483.1 GeneID:14025 MGI:106190
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0003714 - transcription corepressor activity [Evidence IDA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0030183 - B cell differentiation [Evidence IMP]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0030217 - T cell differentiation [Evidence IMP]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : COUP-TF interacting protein 1; ecotropic viral integration site 9; mouse myeloid leukemia product : B-cell CLL/lymphoma 11A (zinc finger protein) protein_id : NP_057916.1

name	LOC100042146 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042146
definition	number : 1 pseudo : _no_value

name	LOC100042146 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042146
definition	number : 2 pseudo : _no_value

name	LOC100042146 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042146
definition	number : 3 pseudo : _no_value

name	LOC100042146 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042146
definition	number : 4 pseudo : _no_value

name	LOC100042146 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042146
definition	number : 5 pseudo : _no_value

name	LOC100042846 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149261680 GeneID:100042846
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 8 Proteins product : similar to initiation factor 2 associated 67 kDa protein pseudo : _no_value transcript_id : XR_034248.1

name	LOC666078 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149261632 GeneID:666078
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 7 Proteins product : similar to Rps16 protein pseudo : _no_value transcript_id : XR_033335.1

name	A730027B03Rik (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149261641 GeneID:319301 MGI:2441821
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 93 ESTs, 1 Protein product : RIKEN cDNA A730027B03 gene transcript_id : XR_002349.2

name	A830031A19Rik (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149261684 GeneID:268391 MGI:2685508
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST product : RIKEN cDNA A830031A19 gene transcript_id : XR_035402.1

clone name	MSMg01-350L16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-388E20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-357D23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-151F17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-437J15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-265H23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-368P03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-209G15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-544H24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-134E09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-480O10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-412B09
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-178C15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-148H18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-294F09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-262O09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-052G07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-393E18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-396G15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-370J05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-168E03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-126P02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-499J09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-153M07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-317M19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-305P06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-467A08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-467F02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-161G16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-162I24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-260P14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-427P20
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-530D13
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-296B20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-148E21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-160M09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-155G02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-387I05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-525P22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-417E19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-494H15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-143H24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-216I13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-168I07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-351F12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-101M20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-387G19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-496A22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-535A16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-434N24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-304P05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-542I23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-459A05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-307D12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-307N14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-546P15
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-378J15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-395P03
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-234A07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-481B20
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-426D08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-542P03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-361H13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-061C02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-338I13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-175K08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-479M10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-073C08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-530E08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-055A15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-475C16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-495E15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-540D05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-269A21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-364O20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-463J13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-511L24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-445B14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-422I03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-355N11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-137F02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-174E10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-318C17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-176C18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-100G17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-335A11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-148O18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-241D09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-346B12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-150G03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-047G23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-197P18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-037B06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-133O13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-001E12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-156M06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-293J16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-117N04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-076P09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-300C08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-039J06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-273J11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-154A09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-323I08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-262K14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-338K15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-060G10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237B04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-248C06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-143J24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-167H07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-008L17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-002J01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-203E20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-146D03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-031M01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-015G17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-268N24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-059E06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-281F23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-277M10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-239G11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-209C12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-150C14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-350P24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-018K02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-255H09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-139A20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-032I23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-077N13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-216F18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-010G16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-010G14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-328J04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-271B02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-105N07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-320A02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-146H02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-143A14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-148I11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-087N20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-149P21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-183C19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-073J07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-337C06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-132M16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-326O11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-173C02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-329E05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-244J11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-288C11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-149E16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-051I08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-113P20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-098K10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-119M23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-346E12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-018D09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-002A22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-234N09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-315B08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-214O06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-267B16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-341N07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-180J20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-076F02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-074H06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-340O24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-238L23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-276D17
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-525P22.T7 (MSMg01no525_p22.b1)	MSMg01-525P22.TJ (MSMg01no525_p22.g1)
ACC	AG595696	AG595697
length	958	777
length of high quality (start - end)	---	625 (65 - 689)
definition	CHROMAT_FILE: MSMg01no525_p22.b1 PHD_FILE: MSMg01no525_p22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:00:47 2005	CHROMAT_FILE: MSMg01no525_p22.g1 PHD_FILE: MSMg01no525_p22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:00:47 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	ATACGACTCCTATAGGTCCATGANCNGCGGAATTCCCAAACCTTTCATGA ATGTCATATTANTATGTATCCANGTTATACATAGAGAAGATTAAATGTCA CCCNTTTATTCATGATGTGTCCTCATGGTTAATTTAACAGATTCAAACAA GCCTACTGAGTTCCATACTCTTTCCTCTTAAAAAAAAAAAAGGTTTTCCA GAATTCCCCCATGGGGCCCTTTGGGAAAATCCCCCTTTTATTTGGGAATA CAAAAGAAAAGGGAATTTTCTTTTTTTTTGGGGCGGGGGAAAAAATTTTT TTGGGGGAAATCTCTTTATTAAATAAATTTGGGGCGCGGTATTTTTTTTC CCCCCGGCACCTCTTGTAAAAAAGGGGGGGGTTCTCTTCCCGCCTTATTT TTCCCAAAAAAACCCCTTTNTATTATATTTCTTTCTCTTACATTCCAACC CCACCCCNTCCTTTTTTGGGGGGGGGGTGGTTGGGCACCAAAAAAAAATA ACACCCCCCTTTGGAAAAGATATTTTTTTTTTTTTTGTGCCCCCGCCTTT TTTTTTTTTTCTTTCTTTGGGGAAGAAAACACACCCCCCCCCTACCTTTT TTCTCTTTTTATAACGCTCTCTTCTCCGCGCCGCCGCCGCCCGTAAAAAA AAAAAAAATATACTCTTGCTGTTCTGTTCTCCGGTAAAAAGAAAAACAAA AAGAAAAACAAAATTATCTTTTCTCCTCCCGCCGGGGTGCTGTGTTTCTT GTCTCTCTCTTGCCGCAGTTTTAAAAAACTCCTCCCCTTTTCTTCTTTTT GTGGCTTTTTGTTGAGTTGAGAAAGGACAACATACTTATCCAACGTCCGC CGGCGGGGGTTGGGTTGTTTTTTTTTTTCTCTCTTTCCGGCCCCTCTCCT CTCTTACTTCCTTGTCTCTTCTTATAATATTGTTTGTGTTGTTTGTGTGT GGTGTTTG	GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXACTCTCGCACCTGCGCACAATGCTTGTTTACTAGTT AGGCACAGCGGGAGCCAGCACCATCTTGTAATGGTGATTACTTACAGCTC TCCACATGCCATGATGATAATGGACTAAGCTTCTGAAACTGCAAGCCAGC CCCAATTAAATGTTTTCCTTTATAAGAGTCGCCATGGTCATGTTGTCTCT CCACAGCAGAAAAAGGCTAAGACAGGCAGGCTGTTACAACCTTTGAACTC AGCAGCACTCCTCCTTAGGCTCCCAAGTGCTAGGAATGCAGGTATGACCG TGATATATGCAATTCCCAACACGTAATACACAGTACACAGTAGGACGCAA ATTAAATGAACAAAAGAGCAAGTGAAGAACAAGAGAGGATGGGGAGAGGA TCTAATGGCTCTGGTCTGTCCCTACTATCAAGAGGGTCTAGTGGTCCTGT TTCTACTACCAGAGTGTTTGGAAAATTTTGCTGTTTTGTTCATTTTTGCT TATTTGTTTATTTCTTCTTCCAGTGGTGGGAATTGAATTCCGAGGTTTGT ACATTGTAGGCTAGCACTCTACCACTGATCTTACATCCCCACTCTGGTTT TCTCTTTTAATATCATTCCTGGTTATAATAAAACCTGTATTGCCTGTANG GAAACATCTTTCAGTTTGTTCCTCTTTCAGTCTGTGTCACGTTTGCAATA AGTTGCCTGTAACGATCTTGATTTCCC
quality values	Open. Hide. 6 6 9 8 6 6 10 8 8 8 8 10 8 8 8 8 8 8 8 7 9 9 3 0 3 0 3 13 9 10 10 13 13 14 9 9 10 9 9 15 13 14 7 7 6 6 6 6 9 12 11 11 12 12 9 9 10 12 13 18 3 0 3 10 10 9 9 9 8 8 8 3 0 3 8 8 9 8 12 8 8 8 9 11 9 10 9 9 9 9 9 10 11 8 8 8 7 7 7 7 7 8 3 0 3 9 8 9 9 8 13 12 11 9 7 6 6 6 6 6 9 8 8 8 8 8 8 11 11 8 8 8 6 8 8 8 6 6 8 6 6 6 6 6 6 7 6 6 6 6 10 9 9 9 9 10 6 6 6 6 10 6 9 9 8 8 8 8 8 8 10 10 8 8 8 6 6 6 7 7 9 9 22 24 24 26 24 22 9 10 9 9 9 9 11 12 9 6 6 6 6 6 8 11 11 11 19 17 12 6 6 6 6 7 6 12 10 14 13 11 8 8 8 8 8 10 13 11 10 9 9 9 9 8 9 8 11 10 11 11 10 10 10 10 10 9 9 6 6 6 6 6 9 16 15 11 10 6 6 6 6 7 6 10 10 9 8 9 7 7 7 12 14 22 20 11 13 11 11 11 9 10 9 9 9 12 9 10 9 9 9 11 15 8 9 9 9 10 14 16 12 9 13 13 15 14 17 13 9 9 8 8 8 8 10 9 9 9 9 9 9 9 10 9 6 6 6 6 6 7 8 8 11 6 6 6 8 8 8 6 6 6 7 12 15 13 10 8 8 8 8 9 12 14 12 15 8 7 7 7 7 7 8 8 8 8 8 8 14 21 21 12 16 13 13 13 11 15 14 9 8 8 10 8 8 6 8 8 8 10 9 10 9 10 8 7 7 7 11 17 18 19 19 14 14 23 20 22 25 8 8 7 7 8 8 11 10 9 3 0 3 10 12 25 16 13 11 11 11 11 12 12 15 15 11 11 8 8 10 8 8 8 11 10 9 7 8 8 8 8 8 8 6 6 8 8 3 0 3 8 8 8 13 15 10 10 10 8 9 8 11 12 12 25 12 10 8 6 6 6 6 6 7 8 8 8 7 7 10 15 30 37 37 32 32 30 9 8 6 6 6 6 6 6 8 8 10 16 16 11 9 9 9 9 9 12 10 7 6 6 6 6 8 8 10 12 22 23 23 23 41 29 29 13 13 8 8 8 8 8 8 10 12 11 11 11 11 11 12 14 19 24 19 20 21 25 30 17 9 10 8 8 8 8 9 9 9 10 10 8 10 6 6 6 6 8 8 10 8 6 8 6 6 8 8 14 16 18 22 18 24 19 14 10 8 8 9 14 17 19 15 7 7 7 8 8 9 8 8 8 8 8 8 8 7 6 8 12 10 8 8 11 8 8 9 11 12 8 8 8 8 10 10 11 13 10 10 8 8 8 8 9 8 8 8 12 13 14 28 18 16 11 12 11 11 15 17 8 6 6 7 6 8 8 10 8 6 6 8 6 9 9 12 10 8 8 8 6 6 6 8 8 6 9 9 10 13 15 13 6 6 6 10 8 8 8 8 8 15 10 9 8 8 8 10 7 13 6 6 6 10 7 6 6 6 7 6 6 9 15 17 7 7 7 7 10 10 8 12 8 8 8 8 9 9 10 10 10 10 10 10 10 8 8 8 8 8 9 13 9 8 8 8 8 10 8 13 13 14 10 8 6 6 8 8 8 8 8 8 10 8 8 9 9 10 10 9 8 8 6 6 8 6 8 8 8 17 20 15 12 12 10 8 8 8 8 10 15 12 8 8 8 8 6 6 8 7 13 11 6 6 6 8 8 10 8 8 6 7 6 9 8 10 9 8 8 8 6 6 8 8 17 8 8 8 8 8 8 9 8 8 8 8 9 8 8 10 13 11 11 6 8 7 9 9 10 21 9 9 8 8 8 10 10 10 8 10 10 10 13 18 10 10 11 11 11 11 20 16 20 11 11 11 10 10 10 8 6 6 6 6 11 11 14 8 10 10 15 22 17 9 9 9 8 6 6 6 6 8 8 6 6 8 8 10 19 18 23 19 18 19 13 9 9 13 8 8 8 13 15 8 8 9 14 10 10 9 10 10 13 11 11 8 8 7 6 8 8 15 12 6 6 6 6 6 6 8 6	Open. Hide. 6 6 8 8 9 24 27 37 37 47 47 37 37 37 32 32 37 44 44 59 27 23 9 9 8 6 6 6 8 8 15 21 32 39 37 34 39 30 30 30 37 33 33 48 50 53 53 53 57 36 21 21 16 16 13 13 19 25 24 37 37 37 40 42 42 42 47 68 68 47 47 47 47 47 50 68 68 51 51 50 50 50 50 50 51 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 51 51 50 50 50 51 68 68 68 68 68 68 50 50 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 57 57 59 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 57 57 57 57 57 57 59 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 59 59 57 57 57 48 57 57 59 59 68 68 68 68 68 57 57 54 54 47 50 54 54 54 54 54 54 54 57 57 54 48 48 48 57 57 54 57 57 57 57 48 57 57 48 48 43 44 40 40 40 43 43 48 57 59 48 43 43 40 40 37 37 29 24 20 25 24 34 41 41 59 34 37 37 37 37 37 39 39 39 37 37 34 34 23 28 23 37 37 48 43 43 43 40 40 39 39 34 37 30 28 28 34 34 34 32 31 37 37 41 39 39 38 34 32 35 41 41 41 41 41 41 34 32 35 35 35 47 39 59 59 35 35 31 39 37 30 25 18 18 18 27 28 32 36 35 32 32 37 27 27 18 20 20 21 21 22 18 22 26 28 32 26 20 15 15 19 19 20 20 20 18 30 24 25 25 25 25 20 20 23 22 28 25 22 15 21 17 17 3 0 3 19 19 27 17 17 14 22 22 25 25 24 22 14 14 15 22 23 28 25 17 25 14 14 14 22 18 17 18 11 11 12 12 22 12 12 12 19 15 23 20 28 22 24 15 12 11 12 11 12 12 12 12 12 17 17 22 18 23 19 18 18 19 14 15 12 15 14 18 20 9 10 9 9 9 12 12 12

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no525_p22.g1 MSMg01no525_p22.g1 CHROMAT_FILE:
MSMg01no525_p22.g1 PHD_FILE: MSMg01no525_p22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:47 2005
         (625 letters)



>mm_chr11_23004015_23005034
          Length = 1020

 Score =  847 bits (438), Expect = 0.0
 Identities = 505/534 (94%), Gaps = 14/534 (2%)
 Strand = Plus / Plus

                                                                       
Query: 100 atgataatggactaagcttctgaaactgcaagccagccccaattaaatgttttcctttat 159
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 293 atgataatggactaagcttctgaaactgcaagtcagccccaattaaatgttttcctttat 352

                                                                       
Query: 160 aagagtcgccatggtcatgttgtctctccacagcagaaaaaggctaagacaggcaggctg 219
           |||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct: 353 aagaatcgccatggtcatggtgtctcttcacagcagaaaaaggctaagacaggcaggctg 412

                                                                       
Query: 220 ttacaacctttgaactcagcagcactcctccttaggctcccaagtgctaggaatgcaggt 279
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 413 ttacaacctttgaactcagcagcactcctccttaggctcccaagtgctaggaatacaggt 472

                                                                       
Query: 280 atgaccgtgatatatgcaattcccaacacgtaatacacagtacacagtaggacgcaaatt 339
           ||||| ||||||||||||||||||||||| |||||||||||||||||||||||  |||||
Sbjct: 473 atgactgtgatatatgcaattcccaacacataatacacagtacacagtaggacataaatt 532

                                                                       
Query: 340 -------aaatgaacaaaagagcaagtgaagaacaagagaggatggggagaggatctaat 392
                  ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 533 gctttttaaatgaacaaaagagcaagtgaagaacaagagaggatggggagaggatctagt 592

                                                                       
Query: 393 ggctctggtctgtccctactatcaagagggtctagtggtcctgtttctactaccagagtg 452
           |||||||     |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 593 ggctctg-----tccctactatcaagagggtctagtggtcctgtttctactatcagagtg 647

                                                                       
Query: 453 tttggaaaattttgctgttttgttcatttttgcttatttgtttatttcttcttccagtgg 512
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 tttgggaaattttgctgttttgttcatttttgcttatttgtttatttcttcttccagtgg 707

                                                                       
Query: 513 tgggaattgaattccgaggtttgtacattgtaggctagcactctaccactgatcttacat 572
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 708 tgggaattgaattcagaggtttgtacattgtaggctagcactctaccactgatct-acat 766

                                                                 
Query: 573 ccccactctggtttt-ctcttttaatatcattcctggttataataaaacctgta 625
           ||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||
Sbjct: 767 ccccactctggtttttctcttttaatatcatccctagttataataaaacctgta 820


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1020
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1010
Effective search space:   621150
Effective search space used:   621150
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information