Query= MSMg01no526_e20.b1 MSMg01no526_e20.b1 CHROMAT_FILE:
MSMg01no526_e20.b1 PHD_FILE: MSMg01no526_e20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:11 2005
(671 letters)
>mm_chr11_80145130_80146201
Length = 1072
Score = 1255 bits (649), Expect = 0.0
Identities = 664/669 (99%), Gaps = 3/669 (0%)
Strand = Plus / Minus
Query: 5 gaattcactcacacccca-ccccaggtcagacacacagacttcttcagacaggggtatcc 63
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 872 gaattcactcacaccccacccccaggtcagacacacagacttcttcagacaggggtatcc 813
Query: 64 actacctcctaggccagactgtcttatccat-ggagggtcaatcgagggatccatggcag 122
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 812 actacctcctaggccagactgtcttatcc-tcggagggtcaatcgagggatccatggcag 754
Query: 123 gtctgggtagaagaaaaagcttcctatgggtttagatgtgccttggccagaaagctgcct 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 gtctgggtagaagaaaaagcttcctatgggtttagatgtgccttggccagaaagctgcct 694
Query: 183 ggcttcattcacaccattgatgccctgggtgttgtgcatactgcacagtgagaggagcct 242
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 693 ggcttcattcacaccactgatgccctgggtgttgtgcacactgcacagtgagaggagcct 634
Query: 243 ctcgttacgtggggagtctcccaacaacagcaggcagctctcattagctctgcctacaag 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 ctcgttacgtggggagtctcccaacaacagcaggcagctctcattagctctgcctacaag 574
Query: 303 cttgatgggaccaaaagggaccaaggaatttccccaggcttacacagctggaacatggga 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 cttgatgggaccaaaagggaccaaggaatttccccaggcttacacagctggaacatggga 514
Query: 363 gtctggtggcaggaactctgtcagtaggcctgttccaatcatatgctctgccctctttcc 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 gtctggtggcaggaactctgtcagtaggcctgttccaatcatatgctctgccctctttcc 454
Query: 423 agaacatacctccctgtctgggtagctgtgggaaatatgcctagcagacaattctgagtc 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 agaacatacctccctgtctgggtagctgtgggaaatatgcctagcagacaattctgagtc 394
Query: 483 agggaccctggagatgaggatctgtgtgtgcccaggaagcctgggcttgtaccacccatg 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 agggaccctggagatgaggatctgtgtgtgcccaggaagcctgggcttgtaccacccatg 334
Query: 543 ggatctcctctgacattccctggggaggagcaccgcagggcccacctgcctacctgccac 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 ggatctcctctgacattccctggggaggagcaccgcagggcccacctgcctacctgccac 274
Query: 603 aacaccggccacgtagacaagcccaattcgggtggctccatgcaccatctccaggggtac 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 aacaccggccacgtagacaagcccaattcgggtggctccatgcaccatctccaggggtac 214
Query: 663 ccctaccag 671
|||||||||
Sbjct: 213 ccctaccag 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1072
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1062
Effective search space: 701982
Effective search space used: 701982
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no526_e20.g1 MSMg01no526_e20.g1 CHROMAT_FILE:
MSMg01no526_e20.g1 PHD_FILE: MSMg01no526_e20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:11 2005
(564 letters)
>mm_chr11_80089429_80090391
Length = 963
Score = 932 bits (482), Expect = 0.0
Identities = 534/558 (95%), Gaps = 15/558 (2%)
Strand = Plus / Plus
Query: 1 tcacacatacatatgtacatacatacatacatacagtggacatacataggtacatacata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 tcacacatacatatgtacatacatacatacatacagtggacatacataggtacatacata 272
Query: 61 cacacggtggatggaaactccaacaactttattttttctcttagccttttatattatcta 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 273 cacacggtggatggaaactccaacaactttattttttctcttagccttttatattaccta 332
Query: 121 tactctacattaaaaaaataataattaagctgagcatggtggcacacgcctttaatttta 180
||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 333 tactctacattaaaa----aataattaagctgagcatggtggcacacgcctttaattcta 388
Query: 181 gcacttgggaggcagaggcaggcagatttctgagttcgaggccagcctggtctacagagt 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 389 gcacttgggaggcagaggcaggcagatttctgagtttgaggccagcctggtctacagagt 448
Query: 241 gagttccaggacagccagggctatacagagaaaccctgtcttg-aaaaccaaataataat 299
||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 449 gagttccaggacagccatggctatacagagaaaccctgtcttgaaaaaccaaataataat 508
Query: 300 aactattattattatattattattattatcattatctcattcaaaagcaaataagatgtt 359
||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 509 aac---tattattatattattatt------attatctcattcaaaagcaaataagatgtt 559
Query: 360 acataaagggagttacagtaggtccaaagcagtagctctatgtctcttttattccataag 419
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct: 560 acataaagggagttacagcaggtccaaagcagtagctatatgtctcttttattccataag 619
Query: 420 ttcattataagttctaacacacaaactctgtgtgtgtgtgcacatatgtacaacatgcta 479
|||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||
Sbjct: 620 ttcattataagttctaacacacaaactctgcgtgcgtgtgcacatatgtacaacgtgcta 679
Query: 480 ataaggagacagccggtctccgtatcttgactcagttatcaatattaattcttgaattct 539
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ataaggagacagc-ggtctccgtatcttgactcagttatcaatattaattcttgaattct 738
Query: 540 caggtagcagactaaatt 557
||||||||||||||||||
Sbjct: 739 caggtagcagactaaatt 756
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 963
Length adjustment: 10
Effective length of query: 554
Effective length of database: 953
Effective search space: 527962
Effective search space used: 527962
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
