BAC Information

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BAC

Clone NameMSMg01-526E21
Chromosome11 (Build37)
Map Location 52,033,914 - 52,184,982
singlet/doubletdoublet
Overlap geneSkp1a, Tcf7, Vdac1
Upstream gene5133400J02Rik, LOC622699, BC049762, Clk4, Col23a1, Agxt2l2, Hnrpab, Nola2, Rmnd5b, C330016O10Rik, D930048N14Rik, 0610009B22Rik, Sec24a, LOC100040402, Sar1b, Phf15, D11Ertd497e, Ube2b, Cdkl3, LOC100040437, Ppp2ca, Olfr1373, Olfr1372-ps1, Olfr1371
Downstream gene9530068E07Rik, LOC667659, LOC667667, LOC100040523, Fstl4, LOC623205, Hspa4, Zcchc10, Aff4, LOC100040576
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-526E21.T7 (MSMg01no526_e21.b1)MSMg01-526E21.TJ (MSMg01no526_e21.g1)
ACCAG595932AG595933
length740742
length of high quality
(start - end)		630 (60 - 689)516 (67 - 582)
definitionCHROMAT_FILE: MSMg01no526_e21.b1 PHD_FILE: MSMg01no526_e21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:11 2005CHROMAT_FILE: MSMg01no526_e21.g1 PHD_FILE: MSMg01no526_e21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,184,353 - 52,184,982)(52,033,914 - 52,034,429)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAGG
ACAGTTTCGTCTGTTATGCAAAGAAACCCTGTCTCAGAGGTGAGGAGACA
AATGAACAAACAAACAACAACAACAAAAACTGTACACCTAATTTATCAAA
CTGGATCTGCGTAGGTGACATCTGACATGATACATGTACCCATTCACAAA
CACGAATATACTATGGTATATTCCTAGCGAGTGGGCGCCCACTGAAGATT
TCAAATGATTCCAGGGAAACAATATCAACTGACCAACACCTGAATCAAGG
ACACCACAAAGAGCTCACAGCAGGACCTGCAAGGTAATCCAGCAGGTGAA
GGTGCCTGCTGGCACAGCTGGAACCTGCAGGATGCAACGGGACTCCCAAA
AGTTACCTCCACATAATAAACCAATCCTTCAGTAAATAACTAAAGACAGC
CTACGGCCAAACCCAATAAACACTACAGAAGAAACAGCCATAGCCTCCAA
TGTGAATGGAATCTGCGGCCCAGGCCATGGTTCACATCTTCAGAGACTGC
TCGAGCCTTCTTTGTGTTGCTGCGGCTCTTACCTCTCGCCCACCAACAGG
CTGGAACCTAATGTAGGCAGATCAGCCCACATTAAGGTCAGGTCAAAAGA
GAGGGCAGAGATATACCCAATACCGCCCCACCCGCTCTTCCAGAGATGGG
GACTCCCCTCTTCTCCTTCCCCTTCCCCCTCAAGCCAGAG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTAGATAGGAGAAGCAAAGGAGATGGAAGGTGGGG
GTGGGGGAGGAGGGCTTGGTGTGCTCTGTGACAGACAAGTGGCCCTCTGG
CACCATCTGCTGGGCAGACTACTGAGTGGTGATGGTTTGGGGGCATTAGC
TAGGATAAAGCTGTTCAATTACAATGCCCTGTCTCTGCCTTCTGTGAGCC
CTTGGGGGTACCCATCTGTTCCAGTAGGTTCTCCATTCTGGGGTGGAGTA
GAGTAAAGTAAAGGGCATTCTCTTCTGATGAGCTTTGGCTTCCTGTGGTG
AGATAGCCATAGCCAGGTTCAAAGTCTGTCTCCTCACTTTTCTGATGTGT
AATCTGGCACAGTTTATGTGGCCAGCTACAGCTTTGCCATCTTGCCCAGT
GTTACAGAATTGAGCTCCTGCCTGGCACACTAGTTTACACAATACCATTT
ATCAGCTCCTAACTTGTAGGGAGGCCCACAACCTGGGCCTCTGGTGGTAT
GGCTATAAATGTGTGTCCACCAACTTTCTCCTCTGTCACTTAGATGTGGA
CACCACTCTTGCCTTGAGCTTCTGATGAACCATCCTGAGGTTGAGGAATA
TCATCCATCAGAAAGCTCTTACCCAAGATGGCCCTGTATATGCAAGGATG
GACCTTTCTTGGACTTTTGTCAATGGTAAAGGCTCAGGTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no526_e21.b1 MSMg01no526_e21.b1 CHROMAT_FILE:
MSMg01no526_e21.b1 PHD_FILE: MSMg01no526_e21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:11 2005
         (630 letters)



>mm_chr11_52184153_52185182
          Length = 1030

 Score = 1149 bits (594), Expect = 0.0
 Identities = 621/630 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgttatgcaaagaaaccctgtctcagaggtgaggagacaaatgaacaaacaaacaaca 60
           ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct: 830 tctgttatgcaaagaaaccttgtctcagaggtgaggagacaaatgaagaaacaaacaaca 771

                                                                       
Query: 61  acaacaaaaactgtacacctaatttatcaaactggatctgcgtaggtgacatctgacatg 120
           ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct: 770 acaacaaaaactgtacacctaatttatcaaactggatctgcataggcgacatctgacatg 711

                                                                       
Query: 121 atacatgtacccattcacaaacacgaatatactatggtatattcctagcgagtgggcgcc 180
           | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 710 acacatgtacccattcacaaacacgaatatactatggtatattcctggcgagtgggcgcc 651

                                                                       
Query: 181 cactgaagatttcaaatgattccagggaaacaatatcaactgaccaacacctgaatcaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 cactgaagatttcaaatgattccagggaaacaatatcaactgaccaacacctgaatcaag 591

                                                                       
Query: 241 gacaccacaaagagctcacagcaggacctgcaaggtaatccagcaggtgaaggtgcctgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 gacaccacaaagagctcacagcaggacctgcaaggtaatccagcaggtgaaggtgcctgc 531

                                                                       
Query: 301 tggcacagctggaacctgcaggatgcaacgggactcccaaaagttacctccacataataa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 tggcacagctggaacctgcaggatgcaacgggactcccaaaagttacctccacataataa 471

                                                                       
Query: 361 accaatccttcagtaaataactaaagacagcctacggccaaacccaataaacactacaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 accaatccttcagtaaataactaaagacagcctacggccaaacccaataaacactacaga 411

                                                                       
Query: 421 agaaacagccatagcctccaatgtgaatggaatctgcggcccaggccatggttcacatct 480
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 410 agaaacagccatagcctccactgtgaatggaatctgcggcccaggccatggttcacatct 351

                                                                       
Query: 481 tcagagactgctcgagccttctttgtgttgctgcggctcttacctctcgcccaccaacag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 tcagagactgctcgagccttctttgtgttgctgcggctcttacctctcgcccaccaacag 291

                                                                       
Query: 541 gctggaacctaatgtaggcagatcagcccacattaaggtcaggtcaaaagagagggcaga 600
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 290 gctggaacctaatgtaggcagaccagcccacattaaggtcaggtcaaaagagagggcaga 231

                                         
Query: 601 gatatacccaataccgccccacccgctctt 630
           |||||||||||||| |||||||||||||||
Sbjct: 230 gatatacccaatactgccccacccgctctt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space:   632400
Effective search space used:   632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no526_e21.g1 MSMg01no526_e21.g1 CHROMAT_FILE:
MSMg01no526_e21.g1 PHD_FILE: MSMg01no526_e21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:11 2005
         (516 letters)



>mm_chr11_52033714_52034629
          Length = 916

 Score =  982 bits (508), Expect = 0.0
 Identities = 514/516 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagataggagaagcaaaggagatggaaggtgggggtgggggaggagggcttggtgtgctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagataggagaagcaaaggagatggaaggtgggggtgggggaggagggcttggtgtgctc 260

                                                                       
Query: 61  tgtgacagacaagtggccctctggcaccatctgctgggcagactactgagtggtgatggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtgacagacaagtggccctctggcaccatctgctgggcagactactgagtggtgatggt 320

                                                                       
Query: 121 ttgggggcattagctaggataaagctgttcaattacaatgccctgtctctgccttctgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgggggcattagctaggataaagctgttcaattacaatgccctgtctctgccttctgtg 380

                                                                       
Query: 181 agcccttgggggtacccatctgttccagtaggttctccattctggggtggagtagagtaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcccttgggggtacccatctgttccagtaggttctccattctggggtggagtagagtaa 440

                                                                       
Query: 241 agtaaagggcattctcttctgatgagctttggcttcctgtggtgagatagccatagccag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtaaagggcattctcttctgatgagctttggcttcctgtggtgagatagccatagccag 500

                                                                       
Query: 301 gttcaaagtctgtctcctcacttttctgatgtgtaatctggcacagtttatgtggccagc 360
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 501 gttcaaagtctgtctcctcacttttctgatgtgtaatctggcacagttaatgtggccagc 560

                                                                       
Query: 361 tacagctttgccatcttgcccagtgttacagaattgagctcctgcctggcacactagttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tacagctttgccatcttgcccagtgttacagaattgagctcctgcctggcacactagttt 620

                                                                       
Query: 421 acacaataccatttatcagctcctaacttgtagggaggcccacaacctgggcctctggtg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acacaataccatttatcagctcctaacttgtagggaggcccacaacctgggcctctggtg 680

                                               
Query: 481 gtatggctataaatgtgtgtccaccaactttctcct 516
           ||||||||||| ||||||||||||||||||||||||
Sbjct: 681 gtatggctatagatgtgtgtccaccaactttctcct 716


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space:   458436
Effective search space used:   458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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