Query= MSMg01no526_g15.b1 MSMg01no526_g15.b1 CHROMAT_FILE:
MSMg01no526_g15.b1 PHD_FILE: MSMg01no526_g15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:20 2005
(562 letters)
>mm_chr11_111497542_111498503
Length = 962
Score = 853 bits (441), Expect = 0.0
Identities = 527/565 (93%), Gaps = 22/565 (3%)
Strand = Plus / Plus
Query: 15 tctttctttttttt--tacattttttaa-ttaggtattttcctcatttacatttcccaat 71
||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 207 tcttttttttttttgttacattttttaaattaggtattttcctcatttacatttcccaat 266
Query: 72 gctatcccaaaaatccccatacccacccccgc----actcctctacccactc-actcccc 126
|||||||||||||||||||||||||||||| | ||||||||||||| || |||||||
Sbjct: 267 gctatcccaaaaatccccatacccacccccccccacactcctctaccca-tccactcccc 325
Query: 127 ctttttggccctggcgttcccctgtactggggcatataaaatttgcaagtccaatgggcc 186
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 326 ctttttggccctggcgttcccctgtactggggcatataaagtttgcaagtccaatgggcc 385
Query: 187 tctctttccagtgatggccaactaggccatcttttgatccatatgcagctagagtcaaga 246
||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||
Sbjct: 386 tctctttccagtgatggccgactgggccatcttttgatacatatgcagctagagtcaaga 445
Query: 247 gctca----ggggaactggttagttcataatgttgttgcacctacagggttgcagttccc 302
|||| |||| |||||||||||||| ||||||||||||| ||||||||| || |
Sbjct: 446 gctccctccggggtactggttagttcat---gttgttgcacctatagggttgcaaatctc 502
Query: 303 tttaattaattctaaagtcctttgccatgcaaaatagaatgcaaactcatgcaaaaaagt 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tttaattaattctaaagtcctttgccatgcaaaatagaatgcaaactcatgcaaaaaagt 562
Query: 363 gaggaggaccatcttgttgtgggatacccaaatctggtcctttcttctaaatcgcagcat 422
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 563 gaggaggaccatcttgttgtgggacacccaaatctggtcctttcttctaaatcgcagcat 622
Query: 423 cttaaaatctgcccatgtggatgggagaaaatacaataacaacaacaacaacaacagcaa 482
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 623 cttaaaatctgtccatgtggatgggagaaaatacaataacaacaacaacaacaacaacaa 682
Query: 483 ca------ccctaaatatataatacttcacatgcatattcaaaattgtcattgcgaaaac 536
|| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 683 caacaacaccctaaatatataatacttcacatgcatattcaaaattggcattgcgaaaac 742
Query: 537 ccaccaggcaccttcttgtataatg 561
|||||||||||||||||||||||||
Sbjct: 743 ccaccaggcaccttcttgtataatg 767
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space: 525504
Effective search space used: 525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no526_g15.g1 MSMg01no526_g15.g1 CHROMAT_FILE:
MSMg01no526_g15.g1 PHD_FILE: MSMg01no526_g15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:20 2005
(617 letters)
>mm_chr11_111675664_111676680
Length = 1017
Score = 833 bits (431), Expect = 0.0
Identities = 471/507 (92%), Gaps = 35/507 (6%)
Strand = Plus / Minus
Query: 1 caagtcaagtcagtaagggttggctcaaccactttacctgtacggcagggtagcttgagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 caagtcaagtcagtaagggttggctcaaccactttacctgtacggcagggtagcttgagg 451
Query: 61 ctacccagttggctttgcctggtcttggagcaaaaaccataagacctctccctaccaact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 ctacccagttggctttgcctggtcttggagcaaaaaccataagacctctccctaccaact 391
Query: 121 tgccttaaaataggcaagaactctccatactttacattcttatcaatggaggcttttaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tgccttaaaataggcaagaactctccatactttacattcttatcaatggaggcttttaga 331
Query: 181 ggcacatccaaacttcatctctcaggacacacctaactgtatctgacaaatgcaatatct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ggcacatccaaacttcatctctcaggacacacctaactgtatctgacaaatgcaatatct 271
Query: 241 atttaaacttttatatttttccaacaactaggtttgggttttctatgtacatctatcaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 atttaaacttttatatttttccaacaactaggtttgggttttctatgtacatctatcaat 211
Query: 301 tatccttcaaatatatatatatatatatatat---------------------------- 332
||||||||||||||||||||||||||||||||
Sbjct: 210 tatccttcaaatatatatatatatatatatatatatatatatatatatatatatatttat 151
Query: 333 -------tttactaataaaatatataacatatacatatatttaccaataaccatatataa 385
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 atttatatttactaataaaatatataacatatacatatatttaccaataaccatatataa 91
Query: 386 tataaatacatataaaatataaatatatacatatacacacgtacacacacacactctatg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90 tataaatacatataaaatataaatatatacatatacacacgtacacacacacactctatg 31
Query: 446 tcagacaaatatctgcaaattaaattg 472
|||||||||| ||||||||||||||||
Sbjct: 30 tcagacaaatgtctgcaaattaaattg 4
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 60
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space: 611249
Effective search space used: 611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
