BAC Information

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BAC

Clone NameMSMg01-527C12
Chromosome11 (Build37)
Map Location 48,984,474 - 48,985,146
singlet/doubletsinglet
Overlap geneBtnl9
Upstream geneLOC192895, Hn1l-ps2, LOC667163, LOC432554, Gnb2l1, Trim41, LOC100039945, Trim7, Irgm, EG432555, OTTMUSG00000005523, Psme2b-ps, LOC667214, Tgtp, LOC667219, 9930111J21Rik, Olfr56, LOC100039796, Ifi47, Olfr1396, Olfr1395, Olfr1394
Downstream geneZfp62, Mgat1, Olfr1393, Olfr1392, Olfr10, Olfr1391, Olfr1390, LOC667286, Olfr1389, Olfr1388, Olfr1387, Olfr1386, Olfr1385, Olfr1549-ps1, Olfr1384, Olfr1383, Olfr1382, GA_x5J8B7TT7LR-4113-3651, Olfr1381, Olfr1380, Flt4, LOC100040032, Scgb3a1, Cnot6, LOC666899, LOC100040073, Gfpt2, Mapk9, Rasgef1c, Rnf130, LOC380696, Tbc1d9b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-527C12.T7 (MSMg01no527_c12.b1)MSMg01-527C12.TJ (MSMg01no527_c12.g1)
ACCAG596576AG596577
length749748
length of high quality
(start - end)		693 (52 - 744)665 (84 - 748)
definitionCHROMAT_FILE: MSMg01no527_c12.b1 PHD_FILE: MSMg01no527_c12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:02:18 2005CHROMAT_FILE: MSMg01no527_c12.g1 PHD_FILE: MSMg01no527_c12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:02:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCATGAAATTCTTAGGCAAATGGATGCATCTGGAGGATATC
ATCCTGAGTGAGGTAACCCAATCACAATAAAACACACATGATATACATTC
ACTGATAATCGGATATTAGCCCAGAAACTTAGAATACCCAAGATACAATA
TGCAAAACACATGAAACTGAAGAAGAAAGAAGACCAAAATGTGTATACTT
TGTTTTTTTTTCTTAGAATGGTGAACAAAATACCCATGGAAGGAGTTACA
GAGACAAAGTTCAGAGCTGAGACGAAAGAAGTGACCATCCAGAGACTGCC
CTACCCTGGTATCCATCACATATACAACCACCAAACCCAGACACGATTGT
ATTTGCCAGGAAGATTTTGCTGACAGGACCCTAATATAGCTCTCTCTTGT
GAGGCTATGCCAGTGCCTGGCAAATACAGAAGTGGATGCTCACAGTCATC
TATTGGATGGAACACAGGGCACCTAATGAATGAGCCTGAGAAAGTATGGA
AGGAGCTAAAGGGGTCTGCAACCTTATAGGAGGAACAACAATATGAACTA
ACCAGTACCACCCAGAGTTGTGTCTCTAGTTGCATATGTAGCCTAGGATG
GCCTTGTCGGCCATCGACTGGAGGAGAGGCCCTTGGGAGTAGGTGGGTTG
GGGAGCAGAGTGGGGGCAGAGAGGGTACAGGGGTCTTTCGGGATAGCAN

NNNNTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTAGGATTAATGGCCT
ACACATGAAACATGTCATTGCAGTTTGGATATGAAATATTCTCCAATGGC
CCTGAGTTAAAGGCTTAGTCCTCAGCTCTGCACTATGTGGAATCTTTAAG
AGAGACAGCAAAAATGAAAGTCTTCTGGCCATCCAGGGGTTATTGAGACT
CTGGCCTTCCTGTCTCTTCTCTTTGCCTACTGTGTGGCAAGCAGCTTTCT
CTACTCACACTCCCTGCTGCAATGTGCTGCCTGGTCACAGGCCCAAGTGA
CCATGGATCCATCACCACTGAAACTGTGATCTCAAGTAAACCTTTGCTCA
CTGCAAGTTTCCTGTATCAGATGCTATGTGACACTACTAGAAGGTGAGAA
ATACACTATACATTAATAAAAGAAGTTATAAGACAGTATCATCGTGGGAT
CCTTAGCAAAGGTCTTCAACAAAATTTCAGGAACATAAGCCATAAGGTAC
AAGTTTTGATGAATTAAACTTTATCAAAAGTAAAGTAATGATTTCTCTTT
AATAATGGGAACATGAACAAAGCTAACAGTAAATGACACAGTAATAAAAG
GAATTCGTGTTGTTTAATATCGATTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTACACCAACACCATACAGGAATCCTCAGAACGTTAGTATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no527_c12.g1 MSMg01no527_c12.g1 CHROMAT_FILE:
MSMg01no527_c12.g1 PHD_FILE: MSMg01no527_c12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:18 2005
         (665 letters)



>mm_chr11_48984274_48985338
          Length = 1065

 Score = 1243 bits (643), Expect = 0.0
 Identities = 662/673 (98%), Gaps = 8/673 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtaggattaatggcctacacatgaaacatgtcattgcagtttggatatgaaatattctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtaggattaatggcctacacatgaaacatgtcattgcagtttggatatgaaatattctc 260

                                                                       
Query: 61  caatggccctgagttaaaggcttagtcctcagctctgcactatgtggaatctttaagaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caatggccctgagttaaaggcttagtcctcagctctgcactatgtggaatctttaagaga 320

                                                                       
Query: 121 gacagcaaaaatgaaagtcttctggccatccaggggttattgagactctggccttcctgt 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 gatagcaaaaatgaaagtcttctggccatccaggggttattgagactctggccttcccgt 380

                                                                       
Query: 181 ctcttctctttgcctactgtgtggcaagcagctttctctactcacactccctgctgcaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcttctctttgcctactgtgtggcaagcagctttctctactcacactccctgctgcaat 440

                                                                       
Query: 241 gtgctgcctggtcacaggcccaagtgaccatggatccatcaccactgaaactgtgatctc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgctgcctggtcacaggcccaagtgaccatggatccatcaccactgaaactgtgatctc 500

                                                                       
Query: 301 aagtaaacctttgctcactgcaagtttcctgtatcagatgctatgtgacactactagaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagtaaacctttgctcactgcaagtttcctgtatcagatgctatgtgacactactagaag 560

                                                                       
Query: 361 gtgagaaatacactatacattaataaaagaagttataagacagtatcatcgtgggatcct 420
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 561 gtgagaaatacactatacattaataaaagaagttataagacagcatcatcgtgggatcct 620

                                                                       
Query: 421 tagcaaaggtcttcaacaaaatttcaggaacataagccataaggtacaagttttgatgaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tagcaaaggtcttcaacaaaatttcaggaacataagccataaggtacaagttttgatgaa 680

                                                                       
Query: 481 ttaaactttatcaaaagtaaagtaatgatttctctttaataatgggaacatgaacaaagc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttaaactttatcaaaagtaaagtaatgatttctctttaataatgggaacatgaacaaagc 740

                                                                       
Query: 541 taacagtaaatgacacagtaataaaaggaattcgtgttgtttaatatcgattgtgtgtgt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 taacagtaaatgacacagtaataaaaggaattcgtgttgtttaatatcgattgtgtgtgt 800

                                                                       
Query: 601 gtgtgtgtgtgtgtgtgtgtgtgtgt--------acaccaacaccatacaggaatcctca 652
           ||||||||||||||||||||||||||        ||||||||||||||||||||||||||
Sbjct: 801 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacaccaacaccatacaggaatcctca 860

                        
Query: 653 gaacgttagtatc 665
           |||||||||||||
Sbjct: 861 gaacgttagtatc 873


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 59
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space:   691025
Effective search space used:   691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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