BAC Information

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BAC

Clone NameMSMg01-527C15
Chromosome11 (Build37)
Map Location 73,793,442 - 73,794,127
singlet/doubletsinglet
Overlap genenone
Upstream geneAtp2a3, P2rx1, LOC100043309, Camkk1, 1200014J11Rik, Itgae, Gsg2, P2rx5, Tmem93, Tax1bp3, Ctns, Carkl, Trpv1, Trpv3, Aspa, Spata22, Olfr20, Olfr376, Olfr377-ps1, Olfr1, Olfr75-ps1, Olfr378, Olfr379-ps1, Olfr380, Olfr381, Olfr382, Olfr383-ps1, Olfr385, Olfr386, Olfr387-ps1, 1700012C15Rik, Olfr388-ps1, Olfr389, Olfr390, Olfr391-ps1, Olfr392, Olfr393, Olfr394, Olfr395, Olfr396-ps1, Olfr23, Olfr22-ps1, Olfr397
Downstream geneOlfr398, Olfr139, Olfr399, OTTMUSG00000006163, LOC668567, Olfr400-ps1, Olfr401, Olfr402, Olfr403, Olfr43, Olfr404-ps1, Olfr405-ps1, Olfr406, Olfr407-ps1, Olfr59, Olfr408-ps1, Olfr409-ps1, LOC193079, Olfr410, Olfr411, Olfr412, Garnl4, E130309D14Rik, 1300001I01Rik, Pafah1b1, Mett10d, Mnt, Rutbc1, Tsr1, Srr, LOC100042478, Smg6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-527C15.T7 (MSMg01no527_c15.b1)MSMg01-527C15.TJ (MSMg01no527_c15.g1)
ACCAG596582AG596583
length752763
length of high quality
(start - end)		693 (46 - 738)685 (79 - 763)
definitionCHROMAT_FILE: MSMg01no527_c15.b1 PHD_FILE: MSMg01no527_c15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:02:19 2005CHROMAT_FILE: MSMg01no527_c15.g1 PHD_FILE: MSMg01no527_c15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:02:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCCAGATTATGGACAATCTCCCAGTGTGTGCAGGTTTTGAATTGAG
AGCTAGTGAAGGTAGGGCCATTATCAGTTTTTATCTGTTGAGTAATGCCC
ATGATGGCCAAGGTGGAGGGCATATGATGAATCAGTCTTTTTGAGTTTTC
ACCTGTTTGGGCTGTATCCCATATAAAACACAAGTACATATCTATGGTGA
CAAAAGCATATTTCTGTCTACCAAATTGGGGAATATGGGTGACATAAATT
TGCCATAAGGCATTGGACTTAAGGCCTTGGGGGTTGGTACCCAACATCTG
TAAAGCTGGGGTGGTAATGAGGGATGCACAAGAGGAGCATTTCTTTATTT
TCCCCAGGGGAGCAAATTGACAGCATATACACTGTCTGAAAAAAGTTAAG
GGGGCTCTTGACTTCTTTTAGAGCTAGATAGGTGGCATATAATTCTTTAT
ATTGGGGGGAGTGACTGGATAGCTCTTTGAATTGGAGGATAGGGGGTTCA
TATTCAGGGAAGAAGTATATTACTGCTGCAACTCCCCCCTTTCCCCATCA
GTAAATATTGAGGGGGCTTTTGCTATGGGCCCTTTTGAAAATAGTTTAGG
GGGCAGCAATCACAGCAGAGGGAGGGCAGAGGCTCATTTTTCATCAGGAT
AATGGTTGTCAATTTGTCCTGGGACTCCTATTAAGCTGACAGTAAAGCAG
GA

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCATGTAATATTTATGTATTT
ATGTGCATATGTATGTAACAATAATAATTAAATAAAAGGAGCCTATGAAT
TTGAGAAGTGAAGACAGGAAATGGAAGGGGTGGGTGGACGAGAGAGAAAA
AGGAAATGATATAATTTCATTTTAATTTGAAAAAATGGCAAAACATAAAA
ATACTTCAGATGTGAAAAAGGACACCTAAATATAGTGACTTTCAGAAACA
ACAAAAAACTTGGTATTTAACAAAAATAAAAAATATATTTCCTTTCAAAG
TATTCTTGAGATAGCTTTCTTTCAAATATGCTTAGTCTAATATATTAAGT
TGTATAACAAACTGCTTAGTAATTACATTGTAATCATACTGTTATGTTGT
AGTTACATGAAATTATATATTTATTAAACAAAGTTAGTTATTTCTACAAA
ATAGGATGAAGAATATATTTCTACTTATTTGAATTTTCTCAGTTGAATTC
TATATATTACTTCATGTAATAATTATATAATAATTTCCACTTTTACTCTC
ATGGATATTTTAATAATTTTAAACAATTTTTGTTTAAAAGTTATTTCTTT
GTATGAAAATTGTGTAGCAGTCCATGTTAGCAAATTTTCTAATTTCTAAG
AAGAATTTTTCAACTAAGTATTCTGACTACTGGAGATACACTGTGAAAGC
TAACATAAATATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no527_c15.g1 MSMg01no527_c15.g1 CHROMAT_FILE:
MSMg01no527_c15.g1 PHD_FILE: MSMg01no527_c15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:19 2005
         (685 letters)



>mm_chr11_73793244_73794328
          Length = 1085

 Score = 1307 bits (676), Expect = 0.0
 Identities = 683/686 (99%), Gaps = 2/686 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcatgtaatatttatgtatttatgtgcatatgtatgtaacaataataattaaataaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 agcatgtaatatttatgtatttatgtgcatatgtatgtaacaataataattaaataaaag 258

                                                                       
Query: 61  gagcctatgaatttgagaagtgaagacaggaaatggaaggggtgggtggacgagagagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gagcctatgaatttgagaagtgaagacaggaaatggaaggggtgggtggacgagagagaa 318

                                                                       
Query: 121 aaaggaaatgatataatttcattttaatttgaaaaaatggcaaaacataaaaatacttca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 aaaggaaatgatataatttcattttaatttgaaaaaatggcaaaacataaaaatacttca 378

                                                                       
Query: 181 gatgtgaaaaaggacacctaaatatagtgactttcagaaacaacaaaaaacttggtattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gatgtgaaaaaggacacctaaatatagtgactttcagaaacaacaaaaaacttggtattt 438

                                                                       
Query: 241 aacaaaaataaaaaatatatttcctttcaaagtattcttgagatagctttctttcaaata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 aacaaaaataaaaaatatatttcctttcaaagtattcttgagatagctttctttcaaata 498

                                                                       
Query: 301 tgctta--gtctaatatattaagttgtataacaaactgcttagtaattacattgtaatca 358
           ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tgcttacagtctaatatattaagttgtataacaaactgcttagtaattacattgtaatca 558

                                                                       
Query: 359 tactgttatgttgtagttacatgaaattatatatttattaaacaaagttagttatttcta 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tactgttatgttgtagttacatgaaattatatatttattaaacaaagttagttatttcta 618

                                                                       
Query: 419 caaaataggatgaagaatatatttctacttatttgaattttctcagttgaattctatata 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 caaaataggatgaagaatatatttctacttatttgaattttctcagttgaattctatata 678

                                                                       
Query: 479 ttacttcatgtaataattatataataatttccacttttactctcatggatattttaataa 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ttacttcatgtaataattatataataatttccacttttactctcatggatattttaataa 738

                                                                       
Query: 539 ttttaaacaatttttgtttaaaagttatttctttgtatgaaaattgtgtagcagtccatg 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 ttttaaacaatttttgtttaaaagttatttctttgtatgaaaattgtgtagcagtccatg 798

                                                                       
Query: 599 ttagcaaattttctaatttctaagaagaatttttcaactaagtattctgactactggaga 658
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 ttagcaaattttctaatttctaagaagaatttttcaactaagtattctgactactggaga 858

                                     
Query: 659 tacactgtgaaagctaacataaatat 684
           |||||||| |||||||||||||||||
Sbjct: 859 tacactgtcaaagctaacataaatat 884


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1085
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1075
Effective search space:   725625
Effective search space used:   725625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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