BAC Information

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BAC

Clone NameMSMg01-527N12
Chromosome11 (Build37)
Map Location 3,323,099 - 3,323,667
singlet/doubletsinglet
Overlap geneRnf185
Upstream geneLOC236604, Sfi1, LOC623257, Eif4enif1, Drg1, Patz1, Pik3ip1, Limk2
Downstream gene8430429K09Rik, LOC100041573, Pla2g3, Pib5pa, Selm, Smtn, Map1lc3-5, LOC625608, Tug1, Morc2a, LOC664900, Osbp2, LOC664920, 4921536K21Rik, Dusp18, Slc35e4, Tcn2, LOC100041720, Pes1, Gal3st1, Sec14l4, Sec14l3, 1700020C11Rik, Sec14l2, LOC625729, Rnf215, 4930562D19Rik, Sf3a1, Tbc1d10a, 2410008K03Rik, LOC625760, Osm, Lif, Hormad2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-527N12.T7 (MSMg01no527_n12.b1)MSMg01-527N12.TJ (MSMg01no527_n12.g1)
ACCAG597101AG597102
length766817
length of high quality
(start - end)		634 (50 - 683)163 (80 - 242)
definitionCHROMAT_FILE: MSMg01no527_n12.b1 PHD_FILE: MSMg01no527_n12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:03:15 2005CHROMAT_FILE: MSMg01no527_n12.g1 PHD_FILE: MSMg01no527_n12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:03:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAGTGCCAGTTTGGACTATATGAAACTGTTTCAAATTAATTA
AAAAATTTAAAAATATACATTAATGAAATTTACCTGAACGGTCAGAATCT
TGAATCAAATATATGCTAATTTCTGCAGTTCTCTTCATTTGTATACCATA
CATTATTTTTAATTCTATTGGAAATTATGTGTGTGTGTTTGCAGTGTGTG
AACTCAGCTATGCATGATTGTAAGAAGCTAGAGGTATCATACTCCATTGA
AGCCTAAGTGGAAGGCAGTTCTGAGCTACACAACGTGGTGCTGGGAACTG
AACGCAGGTCCTCTGAGGAACAGTGTCCTCTTAATCATGGAGTCATGGCT
CCAGCTATATATTCTTATTTTATGTCCCTCTCACTCTTTGGTTAACTGGT
TTCAAATTAAACTTTGGGAGTATATTTCATGATATGCTAAGCAAAGTATC
TTTAAAATGTCGTTGTGTTATCTTTTTAATGTTGTGTTTTAGAGGGGTGT
TCGTTCATATTCTAGCTTCTTATTGTTTCATCATTTATTTATGTATATGT
GTGGGTGCTCCCTGTGGAAGCCAGAATCTCTGGAATCTGGAGTTACAAGT
ATTGTGAGCTGCCTGATTGGGTGCTGGGGACTGAGCTCTGGCCTCTGAAA
AACCAGAAATGCTCTTAACTATTAAGCCATCTCTCTAGGCCATTCTTTTA
TTTTTGAGAAGGATCT

NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCATGAGCCTGGCCTGTGGAC
GAGTCTGTGGGAGCATCTTCTTGCCTAGAGACTGATGTGAGGGGCCCAGT
CTACTGTGACAGTGCCACAACTAGGTCCTGGTAATACAAGCAAGCAGGCT
GAGCAAGCCATGAAGAGCAAGCCAGTGAGCAGCATCCCTCCNACANNCTC
TTAGNNNCTTCAGTTCCTGCATTCAGGTTCCCAGTTCCCCNNNNNNNNNA
AAAAAAAAAAAANAANNNNNNANATTNNNNNNNNCCCTCCCTCTAAAGAN
GAGGCGCANAAACANACAGAAAGGTGGGTTGTGGGCGTCGAGAGAAANNN
NTNTTAGNNNNNCGNNTTGTATAAANAAAGAAAAAAAAAAAAANAAAAAA
AAANAATTTTTTTTTTTCTCCCCCCCCAAAAAAAGGATTGTTTTTTTTTT
TTTGTGTGCGCCCCCCCCCCCCTCTTTTTTTTTTTTTCCTTCACCCCACC
TCATTTTTTTTTATATTTAAAAAAATAAAAATATNNNTTTTTTGTGGGGG
GGGGGGGTGGGATAAAAAAAATTCCCANCNNNNNNNNGGGGGGGAGAAAA
AAAAAAAAAATGAAAATNTTTCTTCTCCTTTTCCCCTCCCTCCCGGNNGT
CGGCCGCCGCGAGNAACCNANCCCCANNCTTCTCCCCAAGTTTGTTTTAT
GTTNTTTTTTTTTTCTTCCCTCNACANNGTCTGNTTGGNATAAGAGAAGC
CAATATATATATTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no527_n12.b1 MSMg01no527_n12.b1 CHROMAT_FILE:
MSMg01no527_n12.b1 PHD_FILE: MSMg01no527_n12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:15 2005
         (634 letters)



>mm_chr11_3322634_3323667
          Length = 1034

 Score = 1069 bits (553), Expect = 0.0
 Identities = 565/569 (99%)
 Strand = Plus / Minus

                                                                        
Query: 66   atacattaatgaaatttacctgaacggtcagaatcttgaatcaaatatatgctaatttct 125
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1034 atacattaatgaaatttacctgaacggtcagaatcttgaatcaaatatatgctaatttct 975

                                                                        
Query: 126  gcagttctcttcatttgtataccatacattatttttaattctattggaaattatgtgtgt 185
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 974  gcagttctcttcatttgtataccatacattatttttaattctattggaaattatgtgtgt 915

                                                                        
Query: 186  gtgtttgcagtgtgtgaactcagctatgcatgattgtaagaagctagaggtatcatactc 245
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 914  gtgtttgcagtgtgtgaactcagctatgcatgattgtaagaagctagaggtatcatactc 855

                                                                        
Query: 246  cattgaagcctaagtggaaggcagttctgagctacacaacgtggtgctgggaactgaacg 305
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854  cattgaagcctaagtggaaggcagttctgagctacacaacgtggtgctgggaactgaacg 795

                                                                        
Query: 306  caggtcctctgaggaacagtgtcctcttaatcatggagtcatggctccagctatatattc 365
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794  caggtcctctgaggaacagtgtcctcttaatcatggagtcatggctccagctatatattc 735

                                                                        
Query: 366  ttattttatgtccctctcactctttggttaactggtttcaaattaaactttgggagtata 425
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 734  ttattttatgtccctctcactctttggttaactggtttcaaattaaacttggggagtata 675

                                                                        
Query: 426  tttcatgatatgctaagcaaagtatctttaaaatgtcgttgtgttatctttttaatgttg 485
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674  tttcatgatatgctaagcaaagtatctttaaaatgtcgttgtgttatctttttaatgttg 615

                                                                        
Query: 486  tgttttagaggggtgttcgttcatattctagcttcttattgtttcatcatttatttatgt 545
            ||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||
Sbjct: 614  tgttttagaggggtgtttgttcatattctagctttttattgttttatcatttatttatgt 555

                                                                        
Query: 546  atatgtgtgggtgctccctgtggaagccagaatctctggaatctggagttacaagtattg 605
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554  atatgtgtgggtgctccctgtggaagccagaatctctggaatctggagttacaagtattg 495

                                         
Query: 606  tgagctgcctgattgggtgctggggactg 634
            |||||||||||||||||||||||||||||
Sbjct: 494  tgagctgcctgattgggtgctggggactg 466


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space:   638976
Effective search space used:   638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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