BAC Information

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BAC

Clone NameMSMg01-528B12
Chromosome11 (Build37)
Map Location 75,499,920 - 75,668,134
singlet/doubletdoublet
Overlap geneCrk, Ywhae, Doc2b, Rph3al
Upstream genePafah1b1, Mett10d, Mnt, Rutbc1, Tsr1, Srr, LOC100042478, Smg6, LOC100043429, LOC627835, Hic1, LOC668604, Ovca2, Dph1, Rtn4rl1, Rpa1, Smyd4, Serpinf1, LOC100043447, Serpinf2, Wdr81, LOC100042498, 2010305C02Rik, Prpf8, Rilp, Scarf1, Slc43a2, Pitpna, LOC654359, Pps, Myo1c
Downstream gene1700016K19Rik, 1500005K14Rik, Vps53, LOC668634, 2310047D13Rik, Gemin4, Dbil5, Glod4, Rnmtl1, Nxn, Timm22, Abr, LOC100043483, A830053O21Rik, Tusc5, Gosr1, Cpd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-528B12.T7 (MSMg01no528_b12.b1)MSMg01-528B12.TJ (MSMg01no528_b12.g1)
ACCAG597291AG597292
length743741
length of high quality
(start - end)		676 (53 - 728)635 (81 - 715)
definitionCHROMAT_FILE: MSMg01no528_b12.b1 PHD_FILE: MSMg01no528_b12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:03:36 2005CHROMAT_FILE: MSMg01no528_b12.g1 PHD_FILE: MSMg01no528_b12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:03:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,499,920 - 75,500,598)(75,667,500 - 75,668,134)
sequence
NNAAACACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTTTGGTGAATGATACTGTGAAAACTGATGTTGCCTGAG
GCCTGAACAGCTTAAAAGTAATTGGCTTTGCAAATAGTAGTGAAGTGCCT
ACTTAAAATAATCCCAGTTATCTGCATTTTTATTTATGTTTTTACTTAAT
TATTTAGTTTCTTATTATACTATATAGCTTTGGCTGGCCTGAAACTCAAT
TTGTAGACCAGGGTAGCCAGGAAATAAGGACATTCCTTCTGTTTTCTGCC
TCCTAAGTTCTGTTATTATAGGCATTTACCACCATACCTGGCTATTTATT
TATTTAAAAAGATTTATTTATGTGATTACTCTGTCGATGTCTTCAAACAC
ATCAGAAGAGGCATCAGGTCCCTTTGCAGATGGTTGTGAGCCACCATGTG
GTTTCTGGGATTTGAACTCAGGACCTCTGGAAGAGCAGTCAATGCTCTTA
ACCACTGAGCCATCTCTACAGCCCCTAATTTTTTTTTTTTTAAGTTTTCA
TGTGCTGGTTTCTTTTTTCTTTCTTTCTTTCTTTTTTTTTTTTTAAGATT
TATTTATTTATTATATGTAAGTACACTATAGCTGTCTTCAGACACTCCAG
AAGAGGGAGTCAGATCTCATTACGGATGGTTGTGAGCCACCATGTGGTTG
CTGGGATTTGAACTCTGGACCTTTGGAAGAGCAGTCGGGTGCT

AATTGCTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCATTTGTACTCTGTCCCGA
ATCTCGCTTTCTTGTCCCCATCACATCACTGATAAGCAGGAAATGAGGAA
CAGTAGGCCTGCATGGAGAGAACCACACAGGGAAGGGAGGCGGTGCAACT
TCCTGTATTCTAAGCACATGTCTCTCCTTCACAGGTCTGGAAGAGGTCAG
GGGCCTGGTTCTACAAAGGGCTCCCCAAGTACATCTTGCCCCTGAAAACC
CCTGGCCGGGCTGATGATCCCCACTTCCGACCTCTGCCTGTGGAGCCCAC
AGAAACACAGCCTCCGAGTGCTGAAACCAGCCGTGTCTACACATGGGCCC
GAGGGAGAGGTAAGAACCCTTTGCCCTCCATGGGGCTCCTGTAGTCCTCA
GCCCCAACGTGTTCCCGAGCAGAGAGCATCTCTGACCTCAAACACAAAGT
GATTGCTCACTCTACAGAGACACAGCCACAGGGCCCTTTGGGAACTGCTT
GCCCAGCAGGACAGTAACTGGGGGTGGGGAGGCAGGAGCAGCACCGTGGC
TCTGTGTGGATAGGATGTCTTTTGTCTGCTTGTAGTGCTGAGGATGGAAC
CCGGGTCCTTGCGCACACTANGCAAGCATCTTCCGGTGAGCTGTCCCCAG
CCCTTGGTCAGTTGGCAGGGGTTTTCAGATCATCTCTCTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no528_b12.b1 MSMg01no528_b12.b1 CHROMAT_FILE:
MSMg01no528_b12.b1 PHD_FILE: MSMg01no528_b12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:36 2005
         (676 letters)



>mm_chr11_75499716_75500787
          Length = 1072

 Score = 1216 bits (629), Expect = 0.0
 Identities = 664/683 (97%), Gaps = 15/683 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttggtgaatgatactgtgaaaactgatgttgcctgaggcctgaacagcttaaa 64
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttggggaatgatactgtgaaaactgatgttgcctgaggcctgaacagcttaaa 264

                                                                       
Query: 65  agtaattggctttgcaaatagtagtgaagtgcctacttaaaataatcccagttatctgca 124
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 265 agtaattggctttgcaaatagtagtgaggtgcctacttaaaataatcccagttatctgca 324

                                                                       
Query: 125 tttttatttatgtttttacttaattatttagtttcttattatactatatagctttggctg 184
           |    |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 t----atttatgtttttacttaattatttagtttcttattatactatatagctttggctg 380

                                                                       
Query: 185 gcctgaaactcaatttgtagaccagggtagccaggaaataaggacattccttctgttttc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcctgaaactcaatttgtagaccagggtagccaggaaataaggacattccttctgttttc 440

                                                                       
Query: 245 tgcctcctaagttctgttattataggcatttaccaccatacctggctatttatttattta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgcctcctaagttctgttattataggcatttaccaccatacctggctatttatttattta 500

                                                                       
Query: 305 ----aaaagatttatttatgtgattactctgtcgatgtcttcaaacacatcagaagaggc 360
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttaaaaagatttatttatgtgattactctgtcgatgtcttcaaacacatcagaagaggc 560

                                                                       
Query: 361 atcaggtccctttgcagatggttgtgagccaccatgtggtttctgggatttgaactcagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atcaggtccctttgcagatggttgtgagccaccatgtggtttctgggatttgaactcagg 620

                                                                       
Query: 421 acctctggaagagcagtcaatgctcttaaccactgagccatctctacagcccctaatttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acctctggaagagcagtcaatgctcttaaccactgagccatctctacagcccctaatttt 680

                                                                       
Query: 481 ttttttttt-aagttttcatgtgctggtttcttttttctttctttctttcttt------t 533
           ||||||||| |||||||||||||||||||||||||||||||||||||||||||      |
Sbjct: 681 ttttttttttaagttttcatgtgctggtttcttttttctttctttctttctttctttttt 740

                                                                       
Query: 534 tttttttttaagatttatttatttattatatgtaagtacactatagctgtcttcagacac 593
           ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 741 ttttttttttagatttatttatttattatatgtaagtacactgtagctgtcttcagacac 800

                                                                       
Query: 594 tccagaagagggagtcagatctcattacggatggttgtgagccaccatgtggttgctggg 653
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tccagaagagggagtcagatctcattacggatggttgtgagccaccatgtggttgctggg 860

                                  
Query: 654 atttgaactctggacctttggaa 676
           |||||||||||||||||||||||
Sbjct: 861 atttgaactctggacctttggaa 883


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 54
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1072
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1062
Effective search space:   707292
Effective search space used:   707292
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no528_b12.g1 MSMg01no528_b12.g1 CHROMAT_FILE:
MSMg01no528_b12.g1 PHD_FILE: MSMg01no528_b12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:36 2005
         (635 letters)



>mm_chr11_75667386_75668420
          Length = 1035

 Score = 1207 bits (624), Expect = 0.0
 Identities = 632/635 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcatttgtactctgtcccgaatctcgctttcttgtccccatcacatcactgataagcagg 60
           |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 tcatttgtactctgtctcgcatctcgctttcttgtccccatcacatcactgataagcagg 690

                                                                       
Query: 61  aaatgaggaacagtaggcctgcatggagagaaccacacagggaagggaggcggtgcaact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 aaatgaggaacagtaggcctgcatggagagaaccacacagggaagggaggcggtgcaact 630

                                                                       
Query: 121 tcctgtattctaagcacatgtctctccttcacaggtctggaagaggtcaggggcctggtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 tcctgtattctaagcacatgtctctccttcacaggtctggaagaggtcaggggcctggtt 570

                                                                       
Query: 181 ctacaaagggctccccaagtacatcttgcccctgaaaacccctggccgggctgatgatcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 ctacaaagggctccccaagtacatcttgcccctgaaaacccctggccgggctgatgatcc 510

                                                                       
Query: 241 ccacttccgacctctgcctgtggagcccacagaaacacagcctccgagtgctgaaaccag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 ccacttccgacctctgcctgtggagcccacagaaacacagcctccgagtgctgaaaccag 450

                                                                       
Query: 301 ccgtgtctacacatgggcccgagggagaggtaagaaccctttgccctccatggggctcct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 ccgtgtctacacatgggcccgagggagaggtaagaaccctttgccctccatggggctcct 390

                                                                       
Query: 361 gtagtcctcagccccaacgtgttcccgagcagagagcatctctgacctcaaacacaaagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gtagtcctcagccccaacgtgttcccgagcagagagcatctctgacctcaaacacaaagt 330

                                                                       
Query: 421 gattgctcactctacagagacacagccacagggccctttgggaactgcttgcccagcagg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 gattgctcactctacagagacacagccacagggccctttgggaactgcttgcccagcagg 270

                                                                       
Query: 481 acagtaactgggggtggggaggcaggagcagcaccgtggctctgtgtggataggatgtct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 acagtaactgggggtggggaggcaggagcagcaccgtggctctgtgtggataggatgtct 210

                                                                       
Query: 541 tttgtctgcttgtagtgctgaggatggaacccgggtccttgcgcacactangcaagcatc 600
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 209 tttgtctgcttgtagtgctgaggatggaacccgggtccttgcgcacactaggcaagcatc 150

                                              
Query: 601 ttccggtgagctgtccccagcccttggtcagttgg 635
           |||||||||||||||||||||||||||||||||||
Sbjct: 149 ttccggtgagctgtccccagcccttggtcagttgg 115


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space:   640625
Effective search space used:   640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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