Query= MSMg01no528_f15.b1 MSMg01no528_f15.b1 CHROMAT_FILE:
MSMg01no528_f15.b1 PHD_FILE: MSMg01no528_f15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:55 2005
(643 letters)
>mm_chr11_107915615_107916658
Length = 1044
Score = 1178 bits (609), Expect = 0.0
Identities = 636/655 (97%), Gaps = 16/655 (2%)
Strand = Plus / Plus
Query: 5 gaattctttctgcctttctgagctggccaccaagaacatgacaatttatgggctttgtat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 gaattctttctgcctttctgagctggccaccaagaacatgacaatttatgggctttgtat 249
Query: 65 acgaaattcataaaaattttctttccctcaagtaactcagtatttttgagaaggtataag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 acgaaattcataaaaattttctttccctcaagtaactcagtatttttgagaaggtataag 309
Query: 125 tatgttgccttattttttttttaaggaatttgtgtttgatattttaaacctgtcttcaaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 tatgttgccttattttttttttaaggaatttgtgtttgatattttaaacctgtcttcaaa 369
Query: 185 tatttaaatattaatccaagtaaaacaaatacatgcctggcataagccattccttacact 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 tatttaaatattaatccaagtaaaacaaatacatgcctggcataagccattccttacact 429
Query: 245 gacattatgtaggcgagacagggggaggataaaaaaagatcagtcttatttccataaagc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 gacattatgtaggcgagacagggggaggataaaaaaagatcagtcttatttccataaagc 489
Query: 305 aagcaaccctgagaagaatccccagggatgactacaaacatgaggctgtgtaggtgtgct 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 aagcaaccctgagaagaatccccagggatgactacaaacatgaggctgtgtaggtgtgct 549
Query: 365 ggttccgccctcccggtaccttgggctttctggaatcctcacccactctccctgggatgt 424
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 ggttccgccctcctggtaccttgggctttctggaatcctcacccactctccctgggatgt 609
Query: 425 taacaagattcatctgcaatattcaaggcagaacctggctattcttttcattctcaatgt 484
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 taacaagattcatctgcgatattcaaggcagaacctggctattcttttcattctcaatgt 669
Query: 485 ttaatctaaacatagcagcacacttttttttttt----------------gaaaaagtca 528
|||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 670 ttaatctaaacatagcagcacacttttttttttttttttttttttttttggaaaaagtca 729
Query: 529 taaataagacctatttgctgcaactaaatactgaaaactgcttcccacatgtggatctcc 588
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 730 taaataagacctatttgctgcaactaaatactgaaaactgcttctcacatgtggatctcc 789
Query: 589 tcaggtttctgtccacaaagctccctgttcaagacgctgtattggctggggctta 643
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 tcaggtttctgtccacaaagctccctgttcaagacgctgtattggctggggctta 844
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1044
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1034
Effective search space: 654522
Effective search space used: 654522
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no528_f15.g1 MSMg01no528_f15.g1 CHROMAT_FILE:
MSMg01no528_f15.g1 PHD_FILE: MSMg01no528_f15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:55 2005
(680 letters)
>mm_chr11_108046201_108047280
Length = 1080
Score = 1301 bits (673), Expect = 0.0
Identities = 678/680 (99%)
Strand = Plus / Minus
Query: 1 ttcactgcataaagaaaccactggtgtttatgtgctgcttgctaatgcctccaaagagct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 880 ttcactgcataaagaaaccactggtgtttatgtgctgcttgctaatgcctccaaagagct 821
Query: 61 ccactccaagggagtcagagaagtcagagagctcataaaatccacagatactggacctac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 ccactccaagggagtcagagaagtcagagagctcataaaatccacagatactggacctac 761
Query: 121 cctgccccaccatcttcaagaataaggggtcagaaaagcactggagaagaagccagctgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 cctgccccaccatcttcaagaataaggggtcagaaaagcactggagaagaagccagctgt 701
Query: 181 gcccagatggcagcagcctgtggaagtgtgttctgagttcttctgaacagaggcgctcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 gcccagatggcagcagcctgtggaagtgtgttctgagttcttctgaacagaggcgctcct 641
Query: 241 tgggctcaagaaaccaccatagttgaaagtctgcattcattttgggtatctgaagaaaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 tgggctcaagaaaccaccatagttgaaagtctgcattcattttgggtatctgaagaaaga 581
Query: 301 cagggcttcatggttcaataaaaggacccctgaagattctcaggtcaatttctcagcctc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 cagggcttcatggttcaataaaaggacccctgaagattctcaggtcaatttctcagcctc 521
Query: 361 tcattctctctgaaggagggatgttccattacctcaaagcatagagggagaaaagaggca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 tcattctctctgaaggagggatgttccattacctcaaagcatagagggagaaaagaggca 461
Query: 421 agaatttctttgagtctaggagcaaccccgcaccatccaagtaaaggaaaaaaagaatgt 480
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 agcatttctttgagtctaggagcaaccccgcaccatccaagtaaaggaaaaaaagaatgt 401
Query: 481 agaaggtacctaacgacctcatgcttagttactggggctgtggattttcagagtaaggag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 agaaggtacctaacgacctcatgcttagttactggggctgtggattttcagagtaaggag 341
Query: 541 cccccagctggaaagtaacaatattggggtgcatggctcanaaagtaggcaggactggaa 600
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 340 cccccagctggaaagtaacaatattggggtgcatggctcagaaagtaggcaggactggaa 281
Query: 601 ggccactaagctctgggcatgcagcctgagattgcagctagggttctgcccaccatcccc 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 ggccactaagctctgggcatgcagcctgagattgcagctagggttctgcccaccatcccc 221
Query: 661 acatctaaagttttgtgaga 680
||||||||||||||||||||
Sbjct: 220 acatctaaagttttgtgaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1080
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1070
Effective search space: 716900
Effective search space used: 716900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
