NNAAAATTTTCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCATTTCTCCCAAGTTGCTTTTGGAAGTATTTTTTC
ATGGCAACAAAAAGAAAACTAAGTTTCTAAATAGAGGAGGTTGTCCTTTT
AAACCACAAACATAATGCTCATTATGGTACCTTAGTATTCTCTGTTTGGA
ATAGCTATACAAATTCAAAAAACATTGTTGACTTAAATCCTCTGGTAAAA
AGTAAATCTTTAAGACACTTAAGATTTTCTCTGCAGTCCAGAGACCACCC
CACCTTTAATGATAGGGCGTTTGTTCTTCCTTTCCTTTCCAGAACCATGC
TTAGAAAATAGCCCATGTTAGGGTTGAACTTAAAAATATTCTCCAGTATT
TGAACACGTGTTTGACTTCAGCAATACATATTGGTGAGGGCAAATAAACT
TAAAAAAAAAGGAGCAAGATAAGTAATTAGTATTAGTGTTAATTACTATT
TTTTTCTACAAATAGCTTATGCTGAAGGAGCATGGCATTACATAAGCTGT
TTGTACACCAACAGGTTTTTTGAATGTCACCAATTTTATATTCATAGAAA
AGAAAAAAGAACATTGTTTTAATTTGGAAACAGCGATTGATTTGTGGAGT
CAGCCTTGCTTAATGAGACAATATTTCATTGGGCTTTAGACTTTGTGTGG
CTTTTTGTATTTGTAATGGACTGTTTTCAGTTGG

NCCCCTTTCTCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGTTTAGCTCTGT
GCCCCATTTTTAATAGGGTTATTTGGGTTTTGGAGGTTAACTTCTTAAGT
TCTTTATATATTTTGGATAGTAGCCCTCTAATGTTAGTAGCTTTTTTATT
TTTATTTATTTTTATTTATTTATTTTACAAATCTGTAGATTTGTCCTATT
TTGTAGATTTGTCCTATTGATTTTGTCTTTTGCCTTACAGAAATTTTTTA
GTTACATGAGGTCCCATTTATCAATTCTTGATCTTAGAGCTTGGGCCATT
GGTGTTCTGTTTAGGAAATTTCCCCCTGTGCCAATGAGTTCAAGGCTCTT
TTCCTATTTCTCTATTAGATTTAGTGTATATGGTTTTATTTTGAGGTCCT
TGTTCAACTGATATTCGATCTTTCTGCAGGGTGATAAATATGTATTGGTT
TTCATTCTCCTACATACAGATTGCCAGTTAGACCGGAAATATTTATTGAA
GATGCTTTCTTTTTTCAACTGTATGGTTTTAGATCCTTTGTCAAAGACCA
AGTATCTGTAGTTGTATGTGTTTACTTCTAGGTCTTTGATTCTATTCTAT
TGGTGGACCTGATTGTTTCTTACCAAGACCATGCAGTTTTTATCACTCTT
GTTTTGTAGTACAGCTTTAGGTCAGGGA

Query= MSMg01no528_i12.b1 MSMg01no528_i12.b1 CHROMAT_FILE:
MSMg01no528_i12.b1 PHD_FILE: MSMg01no528_i12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:09 2005
         (675 letters)



>mm_chr11_27868680_27869751
          Length = 1072

 Score = 1203 bits (622), Expect = 0.0
 Identities = 659/674 (97%), Gaps = 9/674 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatttctcccaagttgcttttggaagtattttttcatggcaacaaaaagaaaact 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatttctcccaagttgcttttggaagtattttttcatggcaacaaaaagaaaact 264

                                                                       
Query: 65  aagtttctaaatagaggaggttgtccttttaaaccacaaacataatgctcattatggtac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aagtttctaaatagaggaggttgtccttttaaaccacaaacataatgctcattatggtac 324

                                                                       
Query: 125 cttagtattctctgtttggaatagctatacaaattcaaaaaacattgttgacttaaatcc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cttagtattctctgtttggaatagctatacaaattcaaaaaacattgttgacttaaatcc 384

                                                                       
Query: 185 tctggtaaaaagtaaatctttaagacacttaagattttctctgcagtccagagaccaccc 244
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 385 tctggtaaaaagtaaatctttaagacacttaaggttttctctgcagtccagagaccaccc 444

                                                                       
Query: 245 cacctttaatgatagggcgtttgttcttcctttcctttccagaaccatgcttagaaaata 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cacctttaatgatagggcgtttgttcttcctttcctttccagaaccatgcttagaaaata 504

                                                                       
Query: 305 gcccatgttagggttgaacttaaaaatattctccagtatttgaacacgtgtttgacttca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gcccatgttagggttgaacttaaaaatattctccagtatttgaacacgtgtttgacttca 564

                                                                       
Query: 365 gcaatacatattggtgagggcaaataaacttaaaaaaaaa--ggagcaagataagtaatt 422
           ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||
Sbjct: 565 gcaatacatattggtgagggcaaataaacttaaaaaaaaaaaggagcaagataagtaatt 624

                                                                       
Query: 423 agtattagtgttaattactattttttt-ctacaaatagcttatgctgaaggagcatggca 481
           ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct: 625 agtattagtgttaattactattttttttctacaaatagctcatgctgaaggagcatggca 684

                                                                       
Query: 482 ttacataagctgtttgtacaccaacaggttttttgaatgtcaccaattttatattcatag 541
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttacataagctgcttgtacaccaacaggttttttgaatgtcaccaattttatattcatag 744

                                                                       
Query: 542 aaaagaaaaaagaacattgttttaatttggaaacagcgattgatttgtggagtcagcctt 601
           |||| |||||||||||  || ||   ||||||||||||||||||||| |||| |||||||
Sbjct: 745 aaaa-aaaaaagaaca--gtatt---ttggaaacagcgattgatttggggagccagcctt 798

                                                                       
Query: 602 gcttaatgagacaatatttcattgggctttagactttgtgtggctttttgtatttgtaat 661
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 gcttaatgagacaatatttcattgggctttagactttgtgtggctttttgtatttgtaat 858

                         
Query: 662 ggactgttttcagt 675
           ||||||||||||||
Sbjct: 859 ggactgttttcagt 872


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1072
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1062
Effective search space:   706230
Effective search space used:   706230
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)