BAC Information

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BAC

Clone NameMSMg01-528J21
Chromosome11 (Build37)
Map Location 68,410,106 - 68,583,390
singlet/doubletdoublet
Overlap geneCcdc42, Myh10
Upstream geneGas7, Rcvrn, Glp2r, LOC544792, Dhrs7c, LOC100041899, Usp43, Wdr16, Stx8, Ntn1, Pik3r5, BB220380, BC024997
Downstream geneNdel1, 9930039A11Rik, Rpl26, Odf4, Arhgef15, Slc25a35, 2400006H24Rik, Pfas, 1500010J02Rik, Aurkb, 2310047M10Rik, Tmem107, Vamp2, Per1, Hes7, Aloxe3, Alox12b, Alox8, Gucy2e, Cntrob, Trappc1, Kcnab3, A030009H04Rik, Chd3, Cyb5d1, Lsmd1, Tmem88, Jmjd3, Dnahc2, Efnb3, Wdr79, LOC100043030, Trp53, Atp1b2, Shbg, Sat2, LOC382532, Fxr2, Sox15, Mpdu1, Cd68, Eif4a1, Senp3, Tnfsf12-tnfsf13, Tnfsf13, Tnfsf12, LOC100041994, Polr2a, Amac1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-528J21.T7 (MSMg01no528_j21.b1)MSMg01-528J21.TJ (MSMg01no528_j21.g1)
ACCAG597691AG597692
length741735
length of high quality
(start - end)		656 (74 - 729)599 (82 - 680)
definitionCHROMAT_FILE: MSMg01no528_j21.b1 PHD_FILE: MSMg01no528_j21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:04:16 2005CHROMAT_FILE: MSMg01no528_j21.g1 PHD_FILE: MSMg01no528_j21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:04:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,582,735 - 68,583,390)(68,410,106 - 68,410,704)
sequence
NCCCTACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCAGCCTTATCACGTTCATTTACATTCATTTACGCATGTGA
ATTATGTCTTAATTAAAAATAATAAAAAATCTACAGCTTGCCTTTTCTTC
GATGACTTTCTTTTTCTACATAAGTGACTTGGAAACAGAAATAAAGTATT
TAGAGAGCAGCAGGCTCCTTAGTAGTGCTTCTGGGCTATTGTTTACTGCT
ATAGCGCCAGTGCGGCCCCAGCATGTGACACGGCACTGAATTCACATTCT
GAATTTTTTTCTTTTTGTATAAAACTTTAGAAACTATTTTCCTCAGGTAT
TTACTGGATGAAGATGCTATCTGGAAGGCAAGCAGGGGTTACAGTTGAGT
ATAAACGAAGCGATGTGATGGTGATAGATCCAGGCACTTGCTGAATGAAG
CACACGGTTCATGGGACCTAGGAACCCTTCTACAGCGAGACCCTTACCCC
TGGGTTCCTTCTCAAAGAGCTTTCGGGGTGTCAGATCAGTTAAAGAGAGA
TGATAATCCACATTGTCCGAGGTTGGCTACTTCTAGAGAAACCACGGTCA
CAGTGGCAGGCTACTGTGTTAGGGTTACAGTGGAAGGGAGTTAATAATAC
TGAGCCAGGGACATAGAGGCAAATAGCTGGGGCTACTGAGCCAGGATCAC
AGGGGCAGGTAGCTGGAGCTACTGTCAACGGTCTGAGAAAT

AAAAAAACATGCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAACGACTAAGCAGCTCACG
CAAACAAACAAACAAACAAACAAAGAGGTGAGAGAGTATAAGTGAAACAG
GAGGTTGAGCACACATTCTGCCCCTGAGTGGAGGGTCACCTTCTGAAGAA
GAGAAACCAGGTTGGGTGTGCGGCTAAGCGCTACAGCATGCGCCCTGCAT
GCACACACGCGTAAGGCCCTGGCTTCCATCCCCAGAATGAAAATATTTCT
TCAGAGCTGTTTTTGTGTGGAGCCCAGCTGGGTCTTCTTAGCCTCTGAGT
CTATCTGGGGTCACTCTGACCACAGGCTTTTAAAACAGAAGTCAGTGAAT
AGAATTTAAATTTCCCTTGAGGACCGGACCCCATCACAGGGAGCATCAGG
CAAGCTCTTTGATGTTGCCAGAGGGCCTTTTACAGCCTTGTCTGCAAAAT
GCTTCACTCTGAGGTCTGCTTGGGACTGGCTCTCTTTCTTCCTCCTATAC
ATTCCTGACTACCTCTTAGCAAGTCCCAGCCCTGACCTTACTGCGCTAAC
TGAGTCCACGGTCATGGTTTAAACCCATAGGCTCGATAGGTCCTTGTCCC
CAGCTTGTGGCACTGGTTTGGGAAGATGAAACCTTTAACAGCAAAGCATG
CCTAGCAGAAGTAGGTTACTAGGTGCAGGTCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no528_j21.b1 MSMg01no528_j21.b1 CHROMAT_FILE:
MSMg01no528_j21.b1 PHD_FILE: MSMg01no528_j21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:16 2005
         (656 letters)



>mm_chr11_68582478_68583533
          Length = 1056

 Score = 1237 bits (640), Expect = 0.0
 Identities = 652/656 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcatttacattcatttacgcatgtgaattatgtcttaattaaaaataataaaaaatcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 913 ttcatttacattcatttacgcatgtgaattatgtcttaattaaaaataataaaaaatcta 854

                                                                       
Query: 61  cagcttgccttttcttcgatgactttctttttctacataagtgacttggaaacagaaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 cagcttgccttttcttcgatgactttctttttctacataagtgacttggaaacagaaata 794

                                                                       
Query: 121 aagtatttagagagcagcaggctccttagtagtgcttctgggctattgtttactgctata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 aagtatttagagagcagcaggctccttagtagtgcttctgggctattgtttactgctata 734

                                                                       
Query: 181 gcgccagtgcggccccagcatgtgacacggcactgaattcacattctgaatttttttctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 gcgccagtgcggccccagcatgtgacacggcactgaattcacattctgaatttttttctt 674

                                                                       
Query: 241 tttgtataaaactttagaaactattttcctcaggtatttactggatgaagatgctatctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 tttgtataaaactttagaaactattttcctcaggtatttactggatgaagatgctatctg 614

                                                                       
Query: 301 gaaggcaagcaggggttacagttgagtataaacgaagcgatgtgatggtgatagatccag 360
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 613 gaaggcaagcaggggttacagttgagtataaacgaagcaatgtgatggtgatagatccag 554

                                                                       
Query: 361 gcacttgctgaatgaagcacacggttcatgggacctaggaacccttctacagcgagaccc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 gcacttgctgaatgaagcacacggttcatgggacctaggaacccttctacagcgagaccc 494

                                                                       
Query: 421 ttacccctgggttccttctcaaagagctttcggggtgtcagatcagttaaagagagatga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 ttacccctgggttccttctcaaagagctttcggggtgtcagatcagttaaagagagatga 434

                                                                       
Query: 481 taatccacattgtccgaggttggctacttctagagaaaccacggtcacagtggcaggcta 540
           ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct: 433 taatccacattgtccgaggttagctacttctagagaaaccatggtcacagtggcaggcta 374

                                                                       
Query: 541 ctgtgttagggttacagtggaagggagttaataatactgagccagggacatagaggcaaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 373 ctgtgttagggttacagtggaagggagttaataatactgagccagggtcatagaggcaaa 314

                                                                   
Query: 601 tagctggggctactgagccaggatcacaggggcaggtagctggagctactgtcaac 656
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 tagctggggctactgagccaggatcacaggggcaggtagctggagctactgtcaac 258


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space:   675716
Effective search space used:   675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no528_j21.g1 MSMg01no528_j21.g1 CHROMAT_FILE:
MSMg01no528_j21.g1 PHD_FILE: MSMg01no528_j21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:16 2005
         (599 letters)



>mm_chr11_68409906_68410904
          Length = 999

 Score = 1127 bits (583), Expect = 0.0
 Identities = 595/599 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacgactaagcagctcacgcaaacaaacaaacaaacaaacaaagaggtgagagagtataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacgactaagcagctcacgcaaacaaacaaacaaacaaacaaagaggtgagagagtataa 260

                                                                       
Query: 61  gtgaaacaggaggttgagcacacattctgcccctgagtggagggtcaccttctgaagaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgaaacaggaggttgagcacacattctgcccctgagtggagggtcaccttctgaagaag 320

                                                                       
Query: 121 agaaaccaggttgggtgtgcggctaagcgctacagcatgcgccctgcatgcacacacgcg 180
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 321 agaaaccaggttgggtgtgcggctaagcgctacagcatgcgccccgcatgcacacacgcg 380

                                                                       
Query: 181 taaggccctggcttccatccccagaatgaaaatatttcttcagagctgtttttgtgtgga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaggccctggcttccatccccagaatgaaaatatttcttcagagctgtttttgtgtgga 440

                                                                       
Query: 241 gcccagctgggtcttcttagcctctgagtctatctggggtcactctgaccacaggctttt 300
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctcagctgggtcttcttagcctctgagtctatctggggtcactctgaccacaggctttt 500

                                                                       
Query: 301 aaaacagaagtcagtgaatagaatttaaatttcccttgaggaccggaccccatcacaggg 360
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaacagaagtcggtgaatagaatttaaatttcccttgaggaccggaccccatcacaggg 560

                                                                       
Query: 361 agcatcaggcaagctctttgatgttgccagagggccttttacagccttgtctgcaaaatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agcatcaggcaagctctttgatgttgccagagggccttttacagccttgtctgcaaaatg 620

                                                                       
Query: 421 cttcactctgaggtctgcttgggactggctctctttcttcctcctatacattcctgacta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cttcactctgaggtctgcttgggactggctctctttcttcctcctatacattcctgacta 680

                                                                       
Query: 481 cctcttagcaagtcccagccctgaccttactgcgctaactgagtccacggtcatggttta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cctcttagcaagtcccagccctgaccttactgcgctaactgagtccacggtcatggttta 740

                                                                      
Query: 541 aacccataggctcgataggtccttgtccccagcttgtggcactggtttgggaagatgaa 599
           |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aacccataggcttgataggtccttgtccccagcttgtggcactggtttgggaagatgaa 799


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space:   582521
Effective search space used:   582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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