BAC Information

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BAC

Clone NameMSMg01-528N20
Chromosome11 (Build37)
Map Location 106,764,650 - 106,765,185
singlet/doubletsinglet
Overlap geneSmurf2
Upstream geneTanc2, Cyb561, Ace, EG217246, Kcnh6, Wdr68, Ccdc44, Map3k3, Limd2, 2610019A05Rik, 2610204L23Rik, Ddx42, Ftsj3, Psmc5, Smarcd2, Tcam1, Gh, Cd79b, Scn4a, 2310007L24Rik, Icam2, Ern1, LOC100041277, Tex2, Pecam1, Gm885, Polg2, Ddx5, Ccdc45
Downstream geneLOC666873, Kpna2, 1810010H24Rik, Bptf, LOC100042899, Nol11, LOC671692, Pitpnc1, Psmd12, A830035A12Rik, Helz, Cacng1, Cacng4, Cacng5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-528N20.T7 (MSMg01no528_n20.b1)MSMg01-528N20.TJ (MSMg01no528_n20.g1)
ACCAG597880AG597881
length760759
length of high quality
(start - end)		691 (67 - 757)650 (77 - 726)
definitionCHROMAT_FILE: MSMg01no528_n20.b1 PHD_FILE: MSMg01no528_n20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:04:35 2005CHROMAT_FILE: MSMg01no528_n20.g1 PHD_FILE: MSMg01no528_n20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:04:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAAGGGGTAAAAAATGGTCCATTAAAATATCAAGAAAGCCGGGC
AGTGGTGGTGCACTCCTTTAATCCCAGCACTTGGGAGGAAGAGGCAGGCA
GATTTCTGAGTTCGAGGACAGCCTAGTCTACAGAGTGAGTTCCAGAACAG
CCAGGGCTATAGAGAGAAACCCTGTCTCCTGAAAAAAAAAAAAAAAAGAA
GAAGAAGAAGCAGAGCTAGGGAGGCAGAGACATGTTGTGTGACAAGACTT
CTTCTGGGGAGTCTTGATACACACACAAACACATACACACACACACACAC
ACACACACATCTACTCGCTCCAAATAGGGAGCCCACAACAGACCAAAGTC
CACCTTGGTGAACCATGGGTTTTACTGGGCTTACTCACAGGAGTATGGGT
TACTTAAAAGAGCAGAAATGACTCAAAGACAACTACATGATCAAAGCCCA
ACCCAGGATGGGTGACCGCTCACAAAAGCTTGGAACCTAGAGCACAGAGC
ACAGCCTACAGGTGGTTCACCAGGCTGGAGACTGCCCTTTCCAAGTGACT
TGGTTGGTCTAAACCTTTTCTAGGCAGCTTGGCTGGTTTCTGGCAGCTCT
AGGCAGCTACTCTGGTTTCAAGTGTTCACTGAAGCTTGTCTTGTCTGAGA
GTGACTCTCANCAGTCTTCATTGTTTATTCTGACNAGTAAATCTGCTCAG
TTTCAGGGAN

NAACCATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGGCCAGCCTGGTCGACACAATG
AGCTCCACAACAGCCAGGACTACATAGACTCTGTTTAAAAAAAAAAGAAT
GTTTATTTGTTTTGATGTAGTATTGGATTGAACCAGGGCCTCTTGCCTAC
TAGGTAAGCACTGCCACTGAGCTACACCCCAACCTTAGAGAAAACATTTA
AAATTCTTTTATATTTCTTTATGCATAAGAATGTGTGTAAGTCAGGATGA
CTTGAGGGTATTGGTTCTCCTTCCCTGTGTGGGTTCCAGGATCAAACTCA
GGTTTTCACCTTTACCCACCGAGCCATGTCATCTGCCTTGGAAGAAAAAA
ATTTCTCTTACACATACAAATTGTTTTTGGATTTACTGGAAATGAGTGCC
AGGGAGGACACTTTAGGGTTCTTTATCTATTGGGTTGAATATTTTTTCTA
AAATGTAAACCTTTCTTGTCTTAGTAAATAGTTACTTTCAGGATCTTGCA
GTCTTACCATTTGTTATTGAATGGATTTAGCATTAAAGCCATATTAATAT
AGATTGAATATATACTATAAATGTGTAATCTTTAAATTTGAGATGAAAAC
TTTTTTTATGACCTGTTCTTTGAATAACTATTTTTAAATGTTATTGTTTT
GCTTTTCTTGGGCTGAAACTTTGGGAACAGAGATTTTTTTTCTGTGACTT
GTACCAGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no528_n20.g1 MSMg01no528_n20.g1 CHROMAT_FILE:
MSMg01no528_n20.g1 PHD_FILE: MSMg01no528_n20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:36 2005
         (650 letters)



>mm_chr11_106764136_106765185
          Length = 1050

 Score = 1015 bits (525), Expect = 0.0
 Identities = 534/537 (99%), Gaps = 1/537 (0%)
 Strand = Plus / Minus

                                                                        
Query: 114  ctcttgcctactaggtaagcactgccactgagctacaccccaaccttagagaaaacattt 173
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1050 ctcttgcctactaggtaagcactgccactgagctacaccccaaccttagagaaaacattt 991

                                                                        
Query: 174  aaaattcttttatatttctttatgcataagaatgtgtgtaagtcaggatgacttgagggt 233
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 990  aaaattcttttatatttctttatgcataagaatgtgtgtaagtcaggatgacttgagggt 931

                                                                        
Query: 234  attggttctccttccctgtgtgggttccaggatcaaactcaggttttcacctttacccac 293
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 930  atttgttctccttccctgtgtgggttccaggatcaaactcaggttttcacctttaccca- 872

                                                                        
Query: 294  cgagccatgtcatctgccttggaagaaaaaaatttctcttacacatacaaattgtttttg 353
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 871  cgagccatgtcatctgccttggaagaaaaaaatttctcttacacatacaaattgtttttg 812

                                                                        
Query: 354  gatttactggaaatgagtgccagggaggacactttagggttctttatctattgggttgaa 413
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811  gatttactggaaatgagtgccagggaggacactttagggttctttatctattgggttgaa 752

                                                                        
Query: 414  tattttttctaaaatgtaaacctttcttgtcttagtaaatagttactttcaggatcttgc 473
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 751  tattttttctaaaatgtaaacttttcttgtcttagtaaatagttactttcaggatcttgc 692

                                                                        
Query: 474  agtcttaccatttgttattgaatggatttagcattaaagccatattaatatagattgaat 533
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691  agtcttaccatttgttattgaatggatttagcattaaagccatattaatatagattgaat 632

                                                                        
Query: 534  atatactataaatgtgtaatctttaaatttgagatgaaaactttttttatgacctgttct 593
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631  atatactataaatgtgtaatctttaaatttgagatgaaaactttttttatgacctgttct 572

                                                                     
Query: 594  ttgaataactatttttaaatgttattgttttgcttttcttgggctgaaactttggga 650
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571  ttgaataactatttttaaatgttattgttttgcttttcttgggctgaaactttggga 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space:   665600
Effective search space used:   665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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