Query= MSMg01no530_m05.b1 MSMg01no530_m05.b1 CHROMAT_FILE:
MSMg01no530_m05.b1 PHD_FILE: MSMg01no530_m05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:12 2005
(307 letters)
>mm_chr11_98844218_98844923
Length = 706
Score = 516 bits (267), Expect = e-151
Identities = 291/299 (97%), Gaps = 1/299 (0%)
Strand = Plus / Minus
Query: 5 gaattctagactcctgccgccgctcttgctcctggcacaaaaagccaggccagcaaggtt 64
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gaattctagactccagtagccgctcttgctcctggcacaaaaagccaggccagcaaggtt 422
Query: 65 ggccctgaagaagaacctagaatctggggaaccttagggtctccctagccaaacaggccc 124
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 421 ggccctgaagaagaacctagaatctggggaaccttagggtctccctagccaagcaggccc 362
Query: 125 aggccaggtgtgcgggggaaatccctcctcagcacccctctatgcccatatgaaggaatc 184
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aggccaggtgtgc-ggggaaatccctcctcagcacccctctatgcccatatgaaggaatc 303
Query: 185 ccatagctgaggatggactatcctcacactctaacattaactcattaaacccctgaaaat 244
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 302 ccatagctgaggatggactatcctcacactctgacattaactcattaaaccccagaaaat 243
Query: 245 attctttccctggcgccctccgagattgttgagggacgagggtgggggtgggggtgggg 303
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 242 attctttccctggcgccctccgagattgttgagggacgggggtgggggtgggggtgggg 184
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 706
Length adjustment: 9
Effective length of query: 298
Effective length of database: 697
Effective search space: 207706
Effective search space used: 207706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no530_m05.g1 MSMg01no530_m05.g1 CHROMAT_FILE:
MSMg01no530_m05.g1 PHD_FILE: MSMg01no530_m05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:12 2005
(588 letters)
>mm_chr11_98700505_98701492
Length = 988
Score = 1129 bits (584), Expect = 0.0
Identities = 587/588 (99%)
Strand = Plus / Plus
Query: 1 aagtagacaatcttgtgttgctcctccacctccaccttcgtggctggcattggcagcagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagtagacaatcttgtgttgctcctccacctccaccttcgtggctggcattggcagcagg 260
Query: 61 gcatgacaaccatgggttgtcagaagccatggttttgtcctggagcagtgcctggggacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcatgacaaccatgggttgtcagaagccatggttttgtcctggagcagtgcctggggacc 320
Query: 121 tggccctaacctgtcctggtgaggacacctggctccctccctgtgccctgcctgtctgtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggccctaacctgtcctggtgaggacacctggctccctccctgtgccctgcctgtctgtg 380
Query: 181 tgtgccaagcaagccctgccccaccccaaggctggcggcaagtcagggcgaccgaccttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtgccaagcaagccctgccccaccccaaggctggcggcaagtcagggcgaccgaccttg 440
Query: 241 tacctggctgactggctgagccaggcccagacaggggtgtggagggaaaagggtggagag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tacctggctgactggctgagccaggcccagacaggggtgtggagggaaaagggtggagag 500
Query: 301 aggagcccctcccctgtccttctcatcattaacccttccacctctgggcacccagtggac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggagcccctcccctgtccttctcatcattaacccttccacctctgggcacccagtggac 560
Query: 361 acaggacttctatttaaagactgagataaagagatggcagcctgtctccgctgtcaattt 420
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 561 acaggacttctatttaaagactgagataaagagatggcggcctgtctccgctgtcaattt 620
Query: 421 tcatggggatggtccccaccctgccctgtggaaattcaaaactgtgaggttgggagtgat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcatggggatggtccccaccctgccctgtggaaattcaaaactgtgaggttgggagtgat 680
Query: 481 cgaggaggatggacacacatcccacacatccacatccctctgactggaacctctgcttgc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cgaggaggatggacacacatcccacacatccacatccctctgactggaacctctgcttgc 740
Query: 541 caattctccgtcgatggtcccttctgtggacccctttttctcctgagc 588
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 caattctccgtcgatggtcccttctgtggacccctttttctcctgagc 788
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space: 565284
Effective search space used: 565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
