Query= MSMg01no530_m22.b1 MSMg01no530_m22.b1 CHROMAT_FILE:
MSMg01no530_m22.b1 PHD_FILE: MSMg01no530_m22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:15 2005
(697 letters)
>mm_chr11_5159850_5160950
Length = 1101
Score = 1011 bits (523), Expect = 0.0
Identities = 533/539 (98%), Gaps = 6/539 (1%)
Strand = Plus / Minus
Query: 165 actagtaaaagaaaactcagagttgctttgttttcttgacagcttggatttaggggaaag 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1101 actagtaaaagaaaactcagagttgctttgttttcttgacagcttggatttaggggaaag 1042
Query: 225 gctgagatttattttctgtgtgattttgaggcaaagctgcttgaacctctgttacttgat 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1041 gctgagatttattttctgtgtgattttgaggcaaagctgcttgaacctctgttacttgat 982
Query: 285 ctgaaa--gggggggggtaactcactcccatgagcagtgttggtgaacattaaatgatac 342
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 981 ctgaaagtgggggggggtaactcactcccatgagcagtgttggtgaacattaaatgatac 922
Query: 343 actgtaggcaacttgcttagagtgttccaccatgtgtagtcattaaacgatttaataata 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 actgtaggcaacttgcttagagtgttccaccatgtgtagtcattaaacgatttaataata 862
Query: 403 cttattatagtgtttcccagttcactaaggactagacacctggtttacccagcgaatact 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 cttattatagtgtttcccagttcactaaggactagacacctggtttacccagcgaatact 802
Query: 463 gaatttctttcaggatgaatcccggcaaaaggcaaagctgggttttgggacggcagaatg 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gaatttctttcaggatgaatcccggcaaaaggcaaagctgggttttgggacggcagaatg 742
Query: 523 aggagttcccaacacaccaaacctgagactcagtagaagtggtttctaggtgattgctgc 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aggagttcccaacacaccaaacctgagactcagtagaagtggtttctaggtgattgctgc 682
Query: 583 cttctatgggacttctataatgtgctcttttctactgtttgtagtatgtgaac----agg 638
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 681 cttctatgggacttctataatgtgctcttttctactgtttgtagtatgtgaacagggagg 622
Query: 639 gagggagggacgttccgagagccaggacgtgtcaacataactgtaacctagtaactcct 697
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gagggagggacgttccgagagccaggacgtgtcaacataactgtaacctagtaactcct 563
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 697
Length of database: 1101
Length adjustment: 10
Effective length of query: 687
Effective length of database: 1091
Effective search space: 749517
Effective search space used: 749517
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no530_m22.g1 MSMg01no530_m22.g1 CHROMAT_FILE:
MSMg01no530_m22.g1 PHD_FILE: MSMg01no530_m22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:15 2005
(601 letters)
>mm_chr11_5018684_5019684
Length = 1001
Score = 1152 bits (596), Expect = 0.0
Identities = 596/596 (100%)
Strand = Plus / Plus
Query: 4 aaaatagaatttccttaggcacagggcccagtgagatggttcagcaggcaaagggacttg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 aaaatagaatttccttaggcacagggcccagtgagatggttcagcaggcaaagggacttg 263
Query: 64 ccattaacctgaaaacttgagtctaatcctctgaacccacatgatagaaggacagatcaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ccattaacctgaaaacttgagtctaatcctctgaacccacatgatagaaggacagatcaa 323
Query: 124 ttattttaagatgtgcccagacctccacttctgccacagatttcgtgtgcgcacatgtac 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttattttaagatgtgcccagacctccacttctgccacagatttcgtgtgcgcacatgtac 383
Query: 184 aaaggaataaaatgtgataaagattgtacattttgttaggagaaatagaagcttggggag 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aaaggaataaaatgtgataaagattgtacattttgttaggagaaatagaagcttggggag 443
Query: 244 gtgagcatacatgtgtgcagacaaaccacccattcgcataaaatagaataaataatctaa 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gtgagcatacatgtgtgcagacaaaccacccattcgcataaaatagaataaataatctaa 503
Query: 304 aaaccaaggtaagagtccagatagatcagtaaagtgcttgctgagttcagacttccagca 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aaaccaaggtaagagtccagatagatcagtaaagtgcttgctgagttcagacttccagca 563
Query: 364 ccctcacaggaggctggccatggcaccagcaaatctaggaatgcagataggacaatctcc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ccctcacaggaggctggccatggcaccagcaaatctaggaatgcagataggacaatctcc 623
Query: 424 gaggtttgctgagtaggtgagctctgagtccagtgagagaccttgtctcaaaaatgaatg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gaggtttgctgagtaggtgagctctgagtccagtgagagaccttgtctcaaaaatgaatg 683
Query: 484 aatgcaaatgaatgagtggatgcataagatggagagtaatagaaggtacctgatactgac 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aatgcaaatgaatgagtggatgcataagatggagagtaatagaaggtacctgatactgac 743
Query: 544 ctctgacctccacgcatgtgcacatacacatactacaaactgaggcgctggactga 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ctctgacctccacgcatgtgcacatacacatactacaaactgaggcgctggactga 799
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1001
Length adjustment: 10
Effective length of query: 591
Effective length of database: 991
Effective search space: 585681
Effective search space used: 585681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
