BAC Information

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BAC

Clone NameMSMg01-531C10
Chromosome11 (Build37)
Map Location 5,608,193 - 5,608,768
singlet/doubletsinglet
Overlap genenone
Upstream geneZmat5, Cabp7, Nf2, Nipsnap1, Thoc5, Nefh, Ap1b1, Rasl10a, Gas2l1, Ewsr1, Rhbdd3, Emid1, Kremen1, Znrf3, LOC100042016, LOC382478, Xbp1, Ccdc117, LOC100041183, Ankrd36, LOC665181, Mrps24
Downstream gene2010005J08Rik, 2210015D19Rik, Dbnl, Pgam2, Polm, Aebp1, Pold2, Myl7, Gck, Ykt6, Camk2b, LOC100042156, Nudcd3, LOC100042173, Npc1l1, LOC100041242, LOC665250, Ddx56, Tmed4, Ogdh, LOC100042227, Zmiz2, Ppia, H2afv, LOC665277, LOC665283, LOC626342, Purb, Myo1g, LOC100041286, Ccm2, LOC665327, AB182283, Tbrg4, Wap, LOC100041311, Ramp3, LOC665314
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-531C10.T7 (MSMg01no531_c10.b1)MSMg01-531C10.TJ (MSMg01no531_c10.g1)
ACCAG599621AG599622
length779766
length of high quality
(start - end)
170 (46 - 215)587 (80 - 666)
definitionCHROMAT_FILE: MSMg01no531_c10.b1 PHD_FILE: MSMg01no531_c10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:07:42 2005CHROMAT_FILE: MSMg01no531_c10.g1 PHD_FILE: MSMg01no531_c10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:07:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTGTGTCTGCTGACACGCGTCCATGGTCACATGACAAGAGACTCC
AACCAGACCTTCCCCTCCTAGTCCTCCTTCTCTTAAAAAAAAAAAATATA
TATATATATATATATATATATATATATATATATATATATATATATATGTA
TATGTATAGTCAAGCTGAGCAGGGAAGCTGAGACAGGAGGATCAAATCAG
CCTGGGCTATAGAACAAGACCCTGCCTCAAACAAACAAAAGACCTTCAAT
GATAACCGTTAAAGCACAGTAAGACAGACTTTACTCTGGGTCATCATAAT
AAGTGTAGGAACCACAGCAACATATTTTGTGGCAGGGACAAAGACTGGGC
TTGACTCCAGATATATGGTATTCAAGGAGCCAGAGGCAGTATCTGTGGTG
GAAAATAAATGAGAGGGAAGACCATACCATGTAATTCCGACTAAGTTCAC
TGTCCGGAATTTTGGTTGAATATAAAGCTAGAGTGGTCAGACATATAAGG
ATTGAAAGAAGGAACCTGGTCAGGTATGGTTATGGTGAGATGTGACCAAC
TATCTGTACCAATACCGTATCTCTGCTCATCATCATCTATGGCTCCCAAT
TGCTTACCGGGCTCTTTTTTTTCTTTGAGTAGAACCATGCTGTGTGTTCC
TCATTTTATTCCCGAACACTCATAATCGGAACTTATTTATTTAATTTCCC
TTTTTGCATTTACGGCATTTCCGCAATAT
CTATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTAGTCCGGTCTACAAAGCGA
GTTCCTGGAGAGTCTGAGTTACAGAGAGAAACCCGTTCTGGCAAAACAAA
ACAAACAAACAAAAGCCATGAAGTTTTTATCCTCATAGAGAGGTGGTAGA
AACAGCTTCAATGTTCTCTAGAGAACTGAAGAGAAAACGCGCCGGCCCTC
AGGCCCCGCCATTCCGTGCTTGTGCTCCTACTTGAGACCGCGTACTCTCC
AGGAATATCCAATATGACAGCGTCAGCCTCCTTTGGGCTGGGAATAGTCA
TTTGCCTTCATGCTGAGCAGATCCCAGAAAAGGGGTTGCTGGGTTGGCTC
CTAATCATTTAAAGTAAAGGGAAAGAGGCAGTGTGTTGAGGGTCTATCTC
TGCGGTGGAGCCACCCAAGGAAGAAAATTTTAAATGGCAAGGAAATTTAT
GAGGCTAGAGCAATGTCGTTGTAATTATTATTGAGTAATTATTAATGGCA
GGGGGGGGAATAGAATCGTGAAGAACTCACTCTACTAAAGAAAGCACATG
GACTCTAGAGTCTGACTCTCATTATAACAAAATATTGAATGAAGGGATTT
TTTTGTTTTGCTTCGGCTTTTTGTTTTGGGGGACTGTTTTGTTTTGCTTT
GCTTGTTTTTGAGACAAGGGCTCTCTGTGTAACAAATTCTGGACTCATTT
TATAGACCAGGCTGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no531_c10.g1 MSMg01no531_c10.g1 CHROMAT_FILE:
MSMg01no531_c10.g1 PHD_FILE: MSMg01no531_c10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:42 2005
         (587 letters)



>mm_chr11_5607993_5608971
          Length = 979

 Score = 1025 bits (530), Expect = 0.0
 Identities = 568/584 (97%), Gaps = 8/584 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctagtccggtctacaaagcgagttcctggagagtctgagttacagagagaaacccgttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctagtccggtctacaaagcgagttcctggagagtctgagttacagagagaaacccgttct 260

                                                                       
Query: 61  ggcaaaacaaaacaaacaaacaaaagccatgaagtttttatcctcatagagaggtggtag 120
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcaaaacagaacaaacaaacaaaagccatgaagtttttatcctcatagagaggtggtag 320

                                                                       
Query: 121 aaacagcttcaatgttctctagagaactgaagagaaaacgcgccggccctcaggccccgc 180
           ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 aaacagcttcaatgtcctctagagaattgaagagaaaacgcgccggccctcaggccccgc 380

                                                                       
Query: 181 cattccgtgcttgtgctcctacttgagaccgcgtactctccaggaatatccaatatgaca 240
             |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgttccgtgcttgtgctcctacctgagaccgcgtactctccaggaatatccaatatgaca 440

                                                                       
Query: 241 gcgtcagcctcctttgggctgggaatagtcatttgccttcatgctgagcagatcccagaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcgtcagcctcctttgggctgggaatagtcatttgccttcatgctgagcagatcccagaa 500

                                                                       
Query: 301 aaggggttgctgggttggctcctaatcatttaaagtaaagggaaagaggcagtgtgttga 360
           ||||||||||||||||||||||||||||||||||||||||      ||||||||||||||
Sbjct: 501 aaggggttgctgggttggctcctaatcatttaaagtaaag------aggcagtgtgttga 554

                                                                       
Query: 361 gggtctatctctgcggtggagccacccaaggaagaaaattttaaatggcaaggaaattta 420
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 gggtctatttctgcggtggagccacccaaggaagaaaattttaaatggcaaggaaattta 614

                                                                       
Query: 421 tgaggctagagcaatgtcgttgtaattattattgagtaattattaatggcagggggggga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 615 tgaggctagagcaatgtcgttgtaattattattgagtaattattaatggcaagggggg-a 673

                                                                       
Query: 481 atagaatcgtgaagaactcactctactaaagaaagcacatggactctagagtctgactct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 atagaatcgtgaagaactcactctactaaagaaagcacatggactctagagtctgactct 733

                                                       
Query: 541 cattataacaaaatattgaatgaagggatttttttgttttgctt 584
           |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 734 cattataacaaaatattgaatgaagggatttttt-gttttgctt 776


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 979
Length adjustment: 10
Effective length of query: 577
Effective length of database: 969
Effective search space:   559113
Effective search space used:   559113
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)