BAC Information

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BAC

Clone NameMSMg01-531F19
Chromosome11 (Build37)
Map Location 80,259,234 - 80,352,078
singlet/doubletdoublet
Overlap genePsmd11, Cdk5r1, Myo1d
Upstream geneNf1, Omg, Evi2b, Evi2a, Rab11fip4, OTTMUSG00000000185, LOC432584, Utp6, ENSMUSG00000072631, Suz12, Crlf3, Atad5, 1110002N22Rik, Centa2, Rnf135, Rhot1, Rhbdl3, 5730455P16Rik, Zfp207, LOC100043601, LOC100042726
Downstream geneTmem98, Spaca3, Accn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-531F19.T7 (MSMg01no531_f19.b1)MSMg01-531F19.TJ (MSMg01no531_f19.g1)
ACCAG599781AG599782
length745754
length of high quality
(start - end)
521 (184 - 704)347 (277 - 623)
definitionCHROMAT_FILE: MSMg01no531_f19.b1 PHD_FILE: MSMg01no531_f19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:07:58 2005CHROMAT_FILE: MSMg01no531_f19.g1 PHD_FILE: MSMg01no531_f19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:07:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,259,234 - 80,259,754)(80,351,732 - 80,352,078)
sequence
NGGATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTGGGTTTTCGATATGAGCTATCATGCTTGTACTTGGTGGCTT
TCTTTTATATTATTTTGATTTCATCTTGAAGTTTTAAGGTACTTTTAATT
TTTTGTATAGAAAATAAACAGCAGTATGGTGTAGGTAACAGTCATGTTGC
CATAGTAAGAAATAGTACTGGGGCTGAGTTCAATTGTTGTGTTGAACTTG
ATGTTATTATCAGATCTTGTATAGCACAGTAAGTGTTCTGTGACTGTTAA
CCTTTTATTTCTTTTTGTGGCTTTTCCCCTTGTTCCTTGTAATCAATGCC
TTTTCTCTTTCCTAGGCAAGGCTGGTGTCTTTGTATTTTGATACCAAGAG
GTACCAGGAAGCATTGCATTTGGGTAAGTAAACTGGTAGAAATCAAAGTA
AGACCTCTAAACTAGCCAAATGAGTGGATTCCAAACCTGGTTATTCTTAC
TGATTGTTAATAATTATATTTTACTTGTGTCTAAGAAGTATTTCAAGTAG
TTTACAATTCATAAATTTACAAATTTATAAAATTTGTCACAGTAAAGTCC
TGCTTTAGATTTGTGAAAAACTGGGGTGGAGGTACAGCTCAGTACACCTG
GGAGTAGCATGGGAATACATTTCTGGGAAGCCAGCTGGGCTTAATCTCAG
GTTTACAGAATAGACATCAGTTTTACGCTTTAATTTAAGTAGGTN
CCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGTGATGCAGACTCACAAGTGTAT
TTTTTATATTGTGCAATTTCATGAAAATCAGCTCTAGGTGTGTGATCTGT
AGGCGAGAAGCTGCAAATGAGGTGGGGAAAAGGGTTCTAAATGGTGGCAC
CTGATGCTAATTCCCAAATAAAAAGGTCCCATGCCATGTTGGGTGGAGAA
CAGTCCTCTGTAGCTGAGTGGTGGAGAATCCTGAGAAGAGACAGTACCAT
TTTCAAACCCTAGTATACATGTGGGGATGCATGACAGCCACACTTTCTGT
GTGACCCTGATTTGGTTGCAAGTTAATGGAGCTCTTATGGATTTTTAAAG
GGAAATCACCAAATACCCTACTTTATGAGTTTCCAAAGCCATATCCTGTT
ATCCTTTTATTTACAGTTTCTGCCAACCATGACTTGCCTTTTATAANGCC
AGGCTCTCTAATGGCTACCACTGGGGTCTCTTCAAAGCCTCTTTCTGAAA
TATGGAAGTTCCAGCTATTGGATTCTTCCTTACACCATACTTTTCAACTC
TTACTAATAGAAGGTAAACTCCAGGCTACATTGTGTGACTGTCCCTGGAG
TCCTTGATTAATAGATGCATCATTGTTAAACAATAGTTATGTATTCAAAA
GAGAGAAATCCCTGAGCAGTGGCCACACACACACCTTTTAATCCCGCACT
TGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no531_f19.b1 MSMg01no531_f19.b1 CHROMAT_FILE:
MSMg01no531_f19.b1 PHD_FILE: MSMg01no531_f19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:58 2005
         (521 letters)



>mm_chr11_80259034_80259954
          Length = 921

 Score =  984 bits (509), Expect = 0.0
 Identities = 518/521 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggtaacagtcatgttgccatagtaagaaatagtactggggctgagttcaattgttgtgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 ggtaacagtcatgttgccatagtaagaaatagtactggggctgagttcagttgttgtgtt 260

                                                                       
Query: 61  gaacttgatgttattatcagatcttgtatagcacagtaagtgttctgtgactgttaacct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaacttgatgttattatcagatcttgtatagcacagtaagtgttctgtgactgttaacct 320

                                                                       
Query: 121 tttatttctttttgtggcttttccccttgttccttgtaatcaatgccttttctctttcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttatttctttttgtggcttttccccttgttccttgtaatcaatgccttttctctttcct 380

                                                                       
Query: 181 aggcaaggctggtgtctttgtattttgataccaagaggtaccaggaagcattgcatttgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggcaaggctggtgtctttgtattttgataccaagaggtaccaggaagcattgcatttgg 440

                                                                       
Query: 241 gtaagtaaactggtagaaatcaaagtaagacctctaaactagccaaatgagtggattcca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtaagtaaactggtagaaatcaaagtaagacctctaaactagccaaatgagtggattcca 500

                                                                       
Query: 301 aacctggttattcttactgattgttaataattatattttacttgtgtctaagaagtattt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aacctggttattcttactgattgttaataattatattttacttgtgtctaagaagtattt 560

                                                                       
Query: 361 caagtagtttacaattcataaatttacaaatttataaaatttgtcacagtaaagtcctgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 561 caagtagtttacaattcataaatttacaaatttataaaatttgtcacggtaaagtcctgc 620

                                                                       
Query: 421 tttagatttgtgaaaaactggggtggaggtacagctcagtacacctgggagtagcatggg 480
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttagattcgtgaaaaactggggtggaggtacagctcagtacacctgggagtagcatggg 680

                                                    
Query: 481 aatacatttctgggaagccagctgggcttaatctcaggttt 521
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aatacatttctgggaagccagctgggcttaatctcaggttt 721


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space:   465521
Effective search space used:   465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no531_f19.g1 MSMg01no531_f19.g1 CHROMAT_FILE:
MSMg01no531_f19.g1 PHD_FILE: MSMg01no531_f19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:58 2005
         (347 letters)



>mm_chr11_80351532_80352278
          Length = 747

 Score =  650 bits (336), Expect = 0.0
 Identities = 344/347 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatcctgagaagagacagtaccattttcaaaccctagtatacatgtggggatgcatgaca 60
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 547 aatcctgagaagagacagtaccattttcaaaccctattatacatgtggggatgcatgaca 488

                                                                       
Query: 61  gccacactttctgtgtgaccctgatttggttgcaagttaatggagctcttatggattttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 gccacactttctgtgtgaccctgatttggttgcaagttaatggagctcttatggattttt 428

                                                                       
Query: 121 aaagggaaatcaccaaataccctactttatgagtttccaaagccatatcctgttatcctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 aaagggaaatcaccaaataccctactttatgagtttccaaagccatatcctgttatcctt 368

                                                                       
Query: 181 ttatttacagtttctgccaaccatgacttgccttttataangccaggctctctaatggct 240
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 367 ttatttacagtttctgccaaccatgacttgccttttataaggccaggctctctaatggct 308

                                                                       
Query: 241 accactggggtctcttcaaagcctctttctgaaatatggaagttccagctattggattct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 accactggggtctcttcaaagcctctttctgaaatatggaagttccagctattggattct 248

                                                          
Query: 301 tccttacaccatacttttcaactcttactaatagaaggtaaactcca 347
           |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 247 tccttacaccatacttttcaactcttactaatagaaggtaaattcca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 747
Length adjustment: 9
Effective length of query: 338
Effective length of database: 738
Effective search space:   249444
Effective search space used:   249444
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)