BAC Information

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BAC

Clone NameMSMg01-532C17
Chromosome11 (Build37)
Map Location 57,018,202 - 57,018,581
singlet/doubletsinglet
Overlap geneGria1
Upstream geneLOC100040816, LOC624168
Downstream geneLOC667878, 1810073G14Rik, Mfap3, Galnt10, Sap30l, Hand1, LOC624605, Larp1, LOC676527, LOC667947, Cnot8, Gemin5, Mrpl22, Irgb10, Igtp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-532C17.T7 (MSMg01no532_c17.b1)MSMg01-532C17.TJ (MSMg01no532_c17.g1)
ACCAG600393AG600394
length745806
length of high quality
(start - end)		609 (52 - 660)252 (82 - 333)
definitionCHROMAT_FILE: MSMg01no532_c17.b1 PHD_FILE: MSMg01no532_c17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:09:01 2005CHROMAT_FILE: MSMg01no532_c17.g1 PHD_FILE: MSMg01no532_c17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:09:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCTGCACTTATTGCTCAATGATCATTGCGGAAGAGAGAGT
AGGGAGCTTATAAGAGCCAGAGAAATAAGAAGTTTGCTGTGGGATTGTAT
CTCCTAGGAATATCAAAAGTTACACCCATATCGTCTCACCAACATGATTA
TCCAAATATGAGCTGAGCAAGGGCCACAGCAGTAGACATGCTCACATGGG
TGGGGGAAAGCCCGGGGGTCCCCAACCCCATACAGCCAACTAAGAAAGGC
TGAGAGTGGGAGAACAGCACACCGACTGGTTATCCATGTAAGTAACATTA
TACAGACTGAGCAGGGCGCATTTATGAATAGGCGTTGTTAATGAAAAGAA
AATAGGGATTGGTACATGAGAGGATTTTGGTGGAGGAAAGGGAAGAAGAT
TTAATTAAATTATAATCTCAAAATATGAAATAAATATATATATATTTAAA
GTAGCATCCACTAGTGTGGTACACTTGACTTCTTAAGACACGGGTGTCAT
CAGCCAATAGATTTGGTCATTTCCTGATGACAACCATAAGAAGACAGAGG
ACTACTATTGCTAACTGACAAATAGGTAAACTGAGGTCTGAGGCTTGGTG
GCCAGCAGAAAGCTTGCCAAGCAAGAGTGACATCGGGGCACAATGCAGTG
TTTGGATCCTTCAGACTCCTTCTCTATAAGCCTTGCCCTTCCTCT

NGGGCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGGGACCCTGTGTACAGC
AGATCTCCTAGCATGGAAACCAGACAGTATGCTGATATCACAGCAATTGG
TAGACTAAGACAGGAGGATAGTCATGAGTTTGAGGCTACAGCTGCCATGT
AGTGAGTTATAAGACAACCTGGGATATATAGAAAAATCCTATGGAAAAAG
GTAAAGGTAAAGGAAAGAAAGGAAGGAGGGGGAAAAGGAAGTAAGAAAGG
GAGAGAGGGAGGGAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAATGTA
NTTATTTATTTAGTTGTGTTTTTTTTTTTTATTATTTTTTTATTTGTTAT
GTAGTAGTTTTTTATTTTGTTGTTTAAATTGGTGAATTATTTTTATTTTC
GTTTGTTTTTTACGTGTGTTTATTTTTTTTTTTTTTTTTTTTATTAAATA
TTGTTTATGTTTGTTTATGATAATAGTTTTATAGTTTTTTTTTTTTTTAT
ATTGTTAGTTTTTTTTTTTGTATTTATATTTTTTTTTTTATGTCTATTAT
TATTTACTTTTATCTTTTGTTGTTGATTTTTATTGTATTTTTTAATAATG
GGTTTATATTTTCTCATTACTTGTCCTTTTACCCAAACGCAGTAATTTTT
TTATATTTTTTTTATCCTCGTTTTTTGTTTCCTCTTTTGTATTTCCAGCT
TTTTTCTCCTTGTATTTCTAATTTTTTATTGTTTCTTTCTATTTCTTTTT
GATCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no532_c17.b1 MSMg01no532_c17.b1 CHROMAT_FILE:
MSMg01no532_c17.b1 PHD_FILE: MSMg01no532_c17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:01 2005
         (609 letters)



>mm_chr11_57017573_57018581
          Length = 1009

 Score =  727 bits (376), Expect = 0.0
 Identities = 379/380 (99%)
 Strand = Plus / Minus

                                                                        
Query: 230  tacagccaactaagaaaggctgagagtgggagaacagcacaccgactggttatccatgta 289
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1009 tacagccaactaagaaaggctgagagtgggagaacagcacaccgactggttatccatgta 950

                                                                        
Query: 290  agtaacattatacagactgagcagggcgcatttatgaataggcgttgttaatgaaaagaa 349
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 949  agtaacattatacagactgagcagggcgcatttatgaataggcgttgttaatgaaaagag 890

                                                                        
Query: 350  aatagggattggtacatgagaggattttggtggaggaaagggaagaagatttaattaaat 409
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 889  aatagggattggtacatgagaggattttggtggaggaaagggaagaagatttaattaaat 830

                                                                        
Query: 410  tataatctcaaaatatgaaataaatatatatatatttaaagtagcatccactagtgtggt 469
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829  tataatctcaaaatatgaaataaatatatatatatttaaagtagcatccactagtgtggt 770

                                                                        
Query: 470  acacttgacttcttaagacacgggtgtcatcagccaatagatttggtcatttcctgatga 529
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769  acacttgacttcttaagacacgggtgtcatcagccaatagatttggtcatttcctgatga 710

                                                                        
Query: 530  caaccataagaagacagaggactactattgctaactgacaaataggtaaactgaggtctg 589
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709  caaccataagaagacagaggactactattgctaactgacaaataggtaaactgaggtctg 650

                                
Query: 590  aggcttggtggccagcagaa 609
            ||||||||||||||||||||
Sbjct: 649  aggcttggtggccagcagaa 630


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space:   598401
Effective search space used:   598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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