NAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCAGGAGCACTTCCAAATGCTCAGTTTCCAATAATGGCAGTT
ACCAGTGCCCCCTGCAAGGATTCTGTGAGCGCTCTGAGCGCTTTCTTGTG
GTGTCCTTGTGGTTTAAAAAGGCATCATGAGTTAGAAAGGTCTGCCCTGA
AGACAAACCTCAGAGAAACATCACTTTTCTATCTTTGCCACTAAAAATAA
TCTTTTATGGTTTTATTCTTTTCTGAACTGGCATGCTATATAGTTTTGTG
GGTTTTTTTTTTTTTTGGAAAGTCTTTTTCATAGACTCATCAACAGACTT
CTCTCAAAAGTTTTTTTTTTAATTTTTATTTTATTTGTGTGTGTGGTGCA
TGCATTTTGTGTCAGTGTATGCCACATGTGTGGGGGTCCTGTGGAAAATA
TAAAAGGGAGACTATACTCTGGAATTGTAGTTACAGGCAGTTGTGAACCA
CCCAATGTGGGTGCTGGCAACAGAACTTGGGTCCTCTGGAACAGTAGCCA
GTCTTAACCACTGAGCTATCTCACCAACCTTCTCAAAAGTTTTAAATGCA
CTAGTTTGCTCTAGGACAGTAATGCAGACTCTTAGATAAATGGGATTTAC
CAGTTTATTCTACTTAGCAGTGAAAACTTGCCTATTCAAGATCAGTCTAT
AGTCTGACACTGCTGACAAAGATGGCGGGAGAGTGGCAGGGGTGGACC

GACCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTATTCTAAGAGCAGGGAGGAGGCAAGGGAC
TCCTGGTGTGGGGGGTGGGGTGGGGGCTGNNNNNNNNNNNNNNNTNNNNN
CNCNNNNNNNTNNNTNTNTTNTCTTGGTGTTTCTTTCTTCTTCTTTCTCC
TGTTTTTCCCCTCCTTTCCTTCCCCCTACCTCCCTCTCTTCTCTTCTTCT
TCCCTCCCCTTTCTCTCCTCTCTTCTTTTCTCCTTCTCTCTCCCCTTCCC
TCTCCTCTCCCCCCTCTTCCCTTCCCTTTTTTTTTTCTCTGCTCCCCCCC
CTGCTCCTCCTTTCTTTTCTTTTCCTCCTNNCCTCCCCTTCCCTTCTTCA
TCCTTACTCTCTCCTTTTTCCCCCCTTTCTCCTTATCCTTTCTCTCTTTT
CTTCCATCTTTTCTCCCCTTACCTTTCCTTTTATTCCTATTTTAACCCTA
ACTCACTTACTTTATCACCCCATATTCTTCACCCTCCTCCATATAATACT
TCTCCTCTATTTCCCCATTTATAAAAATTCTCACTATCCCCCTCCTCTTA
TTATTCAACACTTTACCCCACATACCATATTCTTTTTCATCTTTATCATT
TATCTTTTACTACAACTCCCCCCTTTATTCTTAACCTTTTCTATTTTACC
TCACAACCTTTTAATTTCCCCTCCCTCTTCATTCACCCCCCTTAACTCCT
AATCCACACCCACCAAATTTTTATTATTG

Query= MSMg01no532_k04.b1 MSMg01no532_k04.b1 CHROMAT_FILE:
MSMg01no532_k04.b1 PHD_FILE: MSMg01no532_k04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:36 2005
         (576 letters)



>mm_chr11_87492414_87493392
          Length = 979

 Score = 1054 bits (545), Expect = 0.0
 Identities = 568/579 (98%), Gaps = 10/579 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaggagcacttccaaa--tgctcagtttccaataatggcagttaccagtgcccc 62
           |||||||||||||||  |||||  ||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaggagcac--ccaaaaatgctcagtttccaataatggcagttaccagtgcccc 262

                                                                       
Query: 63  ctgcaaggattctgtgagcgctctgagcgctttcttgtggtgtccttgtggtttaaaaag 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ctgcaaggattctgtgagcgctctgagcgctttcttgtggtgtccttgtggtttaaaaag 322

                                                                       
Query: 123 gcatcatgagttagaaaggtctgccctgaagacaaacctcagagaaacatcacttttcta 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gcatcatgagttagaaaggtctgccctgaagacaaacctcagagaaacatcacttttcta 382

                                                                       
Query: 183 tctttgccactaaaaataatcttttatggttttattcttttctgaactggcatgctatat 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tctttgccactaaaaataatcttttatggttttattcttttctgaactggcatgctatat 442

                                                                       
Query: 243 agttttgtgggtttttttttttttt---ggaaagtctttttcatagactcatcaacagac 299
           |||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||
Sbjct: 443 agttttgtgggtttttttttttttttttggaaagtctttttcatagactcatcaacagac 502

                                                                       
Query: 300 ttctctcaaaagttttttttttaatttttattttatttgtgtgtgtg--gtgcatgcatt 357
           ||||||||||||||||||||| |||||||||||||||||||||||||  |||||||||||
Sbjct: 503 ttctctcaaaagttttttttt-aatttttattttatttgtgtgtgtgtggtgcatgcatt 561

                                                                       
Query: 358 ttgtgtcagtgtatgccacatgtgtgggggtcctgtggaaaatataaaagggagactata 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ttgtgtcagtgtatgccacatgtgtgggggtcctgtggaaaatataaaagggagactata 621

                                                                       
Query: 418 ctctggaattgtagttacaggcagttgtgaaccacccaatgtgggtgctggcaacagaac 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 ctctggaattgtagttacaggcagttgtgaaccacccaatgtgggtgctggcaacagaac 681

                                                                       
Query: 478 ttgggtcctctggaacagtagccagtcttaaccactgagctatctcaccaaccttctcaa 537
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 682 ttgggtcctctggaacagtagccagtcttaaccactgagctatctcaccagccttctcaa 741

                                                  
Query: 538 aagttttaaatgcactagtttgctctaggacagtaatgc 576
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 742 aagttttaaatgcactagtttgctctaggacagtaatgc 780


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 979
Length adjustment: 10
Effective length of query: 566
Effective length of database: 969
Effective search space:   548454
Effective search space used:   548454
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)