BAC Information

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BAC

Clone NameMSMg01-532P04
Chromosome11 (Build37)
Map Location 70,761,661 - 70,928,176
singlet/doubletdoublet
Overlap geneNup88, Rpain, C1qbp, Dhx33, Derl2, Mis12, 6330403K07Rik, LOC382536, Nlrp1a
Upstream geneSlc2a4, LOC668442, Cldn7, Rai12, Dullard, Gabarap, Phf23, Dvl2, Acadvl, Dlg4, Asgr1, Asgr2, Mgl2, Mgl1, Slc16a11, Slc16a13, Bcl6b, 0610010K14Rik, D11Bwg0434e, Alox12, Alox12e, Alox15, LOC668466, Pelp1, Arrb2, Med11, Cxcl16, Zmynd15, Tm4sf5, Vmo1, C730027E14Rik, Psmb6, Pld2, Mink1, Chrne, LOC668433, Gp1ba, Slc25a11, Rnf167, Pfn1, Eno3, Spag7, Camta2, AI842396, Kif1c, LOC668488, Zfp3, A430084P05Rik, Rabep1, LOC668461
Downstream geneNlrp1b, Nlrp1c, LOC100043249, 9230020A06Rik, Wscd1, Aipl1, 6720460F02Rik, Pitpnm3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-532P04.T7 (MSMg01no532_p04.b1)MSMg01-532P04.TJ (MSMg01no532_p04.g1)
ACCAG600986AG600987
length765759
length of high quality
(start - end)		677 (51 - 727)624 (79 - 702)
definitionCHROMAT_FILE: MSMg01no532_p04.b1 PHD_FILE: MSMg01no532_p04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:10:01 2005CHROMAT_FILE: MSMg01no532_p04.g1 PHD_FILE: MSMg01no532_p04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:10:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(70,761,661 - 70,762,334)(70,927,554 - 70,928,176)
sequence
NNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCACTTCATTTAGTGTGCACAACATTGTTTCCTTTGTTTCCT
TCCTACTTCTTTCACCAGAGGTGGGGAGAAAACAAGGGTCTCAAATGGGA
ATTGCTGTCCCCACCAATGTGCTTTATGTCTACATGCCTGTCCTACTTGT
GCCTAACCACATTTCTGCACCTTGTGCCATCAACTGCATAGTTTCAAAGT
GTCCCATTATGCATGTTAGACATGCTTATAGACAAGCTTGTGTTTAGTTT
TGTTCATGAGACATTCCCCACTGTGGCTTGACGGGAAGCTTCATTGTGCC
CAGTCTGGCTTCCTTTGACTTGTTCTTTATTTTGTAACAGCAACCATGTA
TGAGTATACAGTGTATATACAAGTGCCTATTGGCACACCTGTGTGTAGGC
ACAGCTTCAGTTTGGTCCCTTGAGCCAGGGTTTCACTGAGCCAGGCTGGC
AACCAGCAAGTCCCAGTTATCATCCTGTTTCTGTCCCTACTGGAGACGGG
GAACCAGTACTTGGCCATACCTAGCTTTTTTTTAATCTATTTAGAAGTTT
GAGCTCAGATCTTAAAGCTTGCTCAGCAAGTGCTGTTATCCACAGACACA
CCTCCCCATCTCTTTTTTCTCTTTTTAAAATAAACTTTAAGAAGAAAGAA
AAAAAAAAACCTTGCAAATAAACATCACACACTAAAATTAAACAAAGTCT
ATACTTCTCAATAAA

NCCCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTGGGGATGGCATACCAGTGCCT
GGGGCTCAGGCAGATAGAAACCTATCTGCTATGTGGGGCTATGTACAGAC
CTTGCACATGCATGTCACACCCCTCGCCTACCTCTCTCTACCCTCAGGTA
CAGATGGACCCCAATCACTGATGCCAGCTGGAAGATTTTCTTCTCCAATC
TTAAGTTAGCCAGAAACCTGGAGGAGTTGGACCTAAGTGGAAATCCACTG
AGCTACTATGCAGTACACAGTCTTTGTACGACCCTGAGAAAGCGTGGCTG
CCAACTAAAGACTCTGTGGTGAGTCTGGAGTGGGTTCTCAAGAACCCTGA
AGCAGGTGTAGATGGAAGGAGACTAAAGGAGAAGGATAACTCTAGAGGGA
GGCTTAGTATTTATCAAATATTCACTGAACTCCCTTTACACCTATAACAC
ATGCCAGACTTGTTAAGATAAACAAATGGGATTCTGTTCTTGGGGATCAT
GAGAGACTTCATTCATCAAGAAATCCCACTAGCTAATGATAACACTGGAC
TCATGAGGACTTCAGTGGAGCACACTTCCTGAGGACATGAATAAAGCAGA
AGTGAAGAATACAGAGGCAAAGGGAAGCCTGAGGGGAGAAAGCTCCAGGT
CCAAGAAATGACATCTTCCCATTTCCTCCTGCCCACTGCCCTTATAATCA
AACTTCTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no532_p04.b1 MSMg01no532_p04.b1 CHROMAT_FILE:
MSMg01no532_p04.b1 PHD_FILE: MSMg01no532_p04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:01 2005
         (677 letters)



>mm_chr11_70761457_70762534
          Length = 1078

 Score = 1295 bits (670), Expect = 0.0
 Identities = 673/674 (99%), Gaps = 1/674 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacttcatttagtgtgcacaacattgtttcctttgtttccttcctacttctttca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacttcatttagtgtgcacaacattgtttcctttgtttccttcctacttctttca 264

                                                                       
Query: 65  ccagaggtggggagaaaacaagggtctcaaatgggaattgctgtccccaccaatgtgctt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ccagaggtggggagaaaacaagggtctcaaatgggaattgctgtccccaccaatgtgctt 324

                                                                       
Query: 125 tatgtctacatgcctgtcctacttgtgcctaaccacatttctgcaccttgtgccatcaac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tatgtctacatgcctgtcctacttgtgcctaaccacatttctgcaccttgtgccatcaac 384

                                                                       
Query: 185 tgcatagtttcaaagtgtcccattatgcatgttagacatgcttatagacaagcttgtgtt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgcatagtttcaaagtgtcccattatgcatgttagacatgcttatagacaagcttgtgtt 444

                                                                       
Query: 245 tagttttgttcatgagacattccccactgtggcttgacgggaagcttcattgtgcccagt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tagttttgttcatgagacattccccactgtggcttgacgggaagcttcattgtgcccagt 504

                                                                       
Query: 305 ctggcttcctttgacttgttctttattttgtaacagcaaccatgtatgagtatacagtgt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctggcttcctttgacttgttctttattttgtaacagcaaccatgtatgagtatacagtgt 564

                                                                       
Query: 365 atatacaagtgcctattggcacacctgtgtgtaggcacagcttcagtttggtcccttgag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atatacaagtgcctattggcacacctgtgtgtaggcacagcttcagtttggtcccttgag 624

                                                                       
Query: 425 ccagggtttcactgagccaggctggcaaccagcaagtcccagttatcatcctgtttctgt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ccagggtttcactgagccaggctggcaaccagcaagtcccagttatcatcctgtttctgt 684

                                                                       
Query: 485 ccctactggagacggggaaccagtacttggccatacctagcttttttttaatctatttag 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ccctactggagacggggaaccagtacttggccatacctagcttttttttaatctatttag 744

                                                                       
Query: 545 aagtttgagctcagatcttaaagcttgctcagcaagtgctgttatccacagacacacctc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aagtttgagctcagatcttaaagcttgctcagcaagtgctgttatccacagacacacctc 804

                                                                       
Query: 605 cccatctcttttttctctttttaaaataaactttaagaagaaagaaaaaaaaaaa-cctt 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 805 cccatctcttttttctctttttaaaataaactttaagaagaaagaaaaaaaaaaaacctt 864

                         
Query: 664 gcaaataaacatca 677
           ||||||||||||||
Sbjct: 865 gcaaataaacatca 878


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1078
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1068
Effective search space:   712356
Effective search space used:   712356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no532_p04.g1 MSMg01no532_p04.g1 CHROMAT_FILE:
MSMg01no532_p04.g1 PHD_FILE: MSMg01no532_p04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:01 2005
         (624 letters)



>mm_chr11_70927354_70928376
          Length = 1023

 Score = 1183 bits (612), Expect = 0.0
 Identities = 621/624 (99%), Gaps = 1/624 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggggatggcataccagtgcctggggctcaggcagatagaaacctatctgctatgtgggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 tggggatggcataccagtgcctggggctcaggcagatagaaacctatctgctatgtgggg 764

                                                                       
Query: 61  ctatgtacagaccttgcacatgcatgtcacacccctcgcctacctctctctaccctcagg 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 763 ctatgtacagaccttgcacatgcatgtcacacccctctcctacctctctctaccctcagg 704

                                                                       
Query: 121 tacagatggaccccaatcactgatgccagctggaagattttcttctccaatcttaagtta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 tacagatggaccccaatcactgatgccagctggaagattttcttctccaatcttaagtta 644

                                                                       
Query: 181 gccagaaacctggaggagttggacctaagtggaaatccactgagctactatgcagtacac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 gccagaaacctggaggagttggacctaagtggaaatccactgagctactatgcagtacac 584

                                                                       
Query: 241 agtctttgtacgaccctgagaaagcgtggctgccaactaaagactctgtggtgagtctgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 agtctttgtacgaccctgagaaagcgtggctgccaactaaagactctgtggtgagtctgg 524

                                                                       
Query: 301 agtgggttctcaagaaccctgaagcaggtgtagatggaaggagactaaaggagaaggata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 agtgggttctcaagaaccctgaagcaggtgtagatggaaggagactaaaggagaaggata 464

                                                                       
Query: 361 actctagagggaggcttagtatttatcaaatattcactgaactccctttacacctataac 420
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 actctagagggaggcttaatatttatcaaatattcactgaactccctttacacctataac 404

                                                                       
Query: 421 acatgccagacttgttaagataaacaaatgggattctgttcttggggatcatgagagact 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 acatgccagacttgttaagataaacaaatgggattctgttcttggggatcatgagagact 344

                                                                       
Query: 481 tcattcatcaagaaatcccactagctaatgataacactggactcatgaggacttcagtgg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 tcattcatcaagaaatcccactagctaatgataacactggactcatgaggacttcagtgg 284

                                                                       
Query: 541 agcacacttcctgaggacatgaataaagcagaagtgaagaatacagaggcaaagggaagc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 agcacacttcctgaggacatgaataaagcagaagtgaagaatacagaggcaaagggaagc 224

                                   
Query: 601 ctgaggggagaaagctccaggtcc 624
           ||| ||||||||||||||||||||
Sbjct: 223 ctg-ggggagaaagctccaggtcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1023
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1013
Effective search space:   621982
Effective search space used:   621982
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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