Query= MSMg01no533_a06.b1 MSMg01no533_a06.b1 CHROMAT_FILE:
MSMg01no533_a06.b1 PHD_FILE: MSMg01no533_a06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:07 2005
(616 letters)
>mm_chr11_50086505_50087520
Length = 1016
Score = 1129 bits (584), Expect = 0.0
Identities = 605/612 (98%), Gaps = 1/612 (0%)
Strand = Plus / Plus
Query: 5 gaattcagcttccttccctcacagctctattctgcatagatacgctcagaggcttcacgg 64
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 206 gaattcagcttccttccctcacagctctattctgcatagatacgttcagaggcttcacgg 265
Query: 65 ctgtttttgttggaaaaattcattatttacaaagtgtaccttgccactctgtcactgtct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ctgtttttgttggaaaaattcattatttacaaagtgtaccttgccactctgtcactgtct 325
Query: 125 tcagacacaccagaaaagggcatccaatcccattacagatggtagtgagccattgctggg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tcagacacaccagaaaagggcatccaatcccattacagatggtagtgagccattgctggg 385
Query: 185 aattgaactcaggacctttggaagagcagtcagtgctcttaaccactgagccatctctcc 244
||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 386 aattgaactcaggacctctggaagagcagtcagt-ctcttaaccactgagccatctctcc 444
Query: 245 agcccctgtctgagtttcttaatctgggatcccactgaatattcaaacacccctaggaca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agcccctgtctgagtttcttaatctgggatcccactgaatattcaaacacccctaggaca 504
Query: 305 tgagacccattgatcccatgttacagccagtaaaattcagtaaatctcatgttttctaca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgagacccattgatcccatgttacagccagtaaaattcagtaaatctcatgttttctaca 564
Query: 365 gctttcagtgtttagctatcttgggaaggatccttgtaaatactggaatctgctttagag 424
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gctttcagtgtttggctatcttgggaaggatccttgtaaatactggaatctgctttagag 624
Query: 425 ccttcagcccaatcttgcagatgaaatcccagtgggaaaatggcgtgcatcagagtttca 484
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 625 ccttcagcccaatcttgcagatgaaatcccagtgggaaaatggcgtgcatcagcgtttca 684
Query: 485 gatcatacacatgttccctcagcaaagaatggggaagagccctccagatgctatcagtag 544
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 685 gatcatacacatgttccctcagcaaagaatggggaagagccctccaggtgctatcagtag 744
Query: 545 aaaaacaagcccacacaggcccacagcagttctttttaaagagatacataagcctttaat 604
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 745 aaaaacaagcccacacaggcccacagcagttcttttttaagagatacataagcctttaat 804
Query: 605 cccagcactcgg 616
||||||||||||
Sbjct: 805 cccagcactcgg 816
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1016
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1006
Effective search space: 609636
Effective search space used: 609636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no533_a06.g1 MSMg01no533_a06.g1 CHROMAT_FILE:
MSMg01no533_a06.g1 PHD_FILE: MSMg01no533_a06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:07 2005
(553 letters)
>mm_chr11_50248299_50249251
Length = 953
Score = 837 bits (433), Expect = 0.0
Identities = 448/453 (98%)
Strand = Plus / Minus
Query: 1 actctgtagaccagagatccacctgccactgcctcttgaattctgggattaaaggtatgt 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 actctgtagaccagaaatccacctgccactgcctcttgaattctgggattaaaggtatgt 394
Query: 61 gccattacacccagctaaatatgcatatatttttaaagctagccagccatgctaaaactg 120
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 393 gccattacacccagctaaatatgcatatatttttaaagctagccagtcatgctaaaactg 334
Query: 121 gtatagacagcagagcctgtgcaaataattagtttggagtctttaaaaatagaaagaggg 180
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 gtatagacagcagagccagtgcaaataattagtttggagtctttaaaaatagaaagaggg 274
Query: 181 ctagagagatggcttagtggttaagagtatctactgttcttccagaggtcctgagttcaa 240
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 273 ctagagagatggcttagtggttaagagtatctactgttcttccagaggccctgagttcaa 214
Query: 241 taccagcaaccacatggtggctcacaaccatctgcaatggggatctgatgccctcttctg 300
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 taccagcaactacatggtggctcacaaccatctgcaatggggatctgatgccctcttctg 154
Query: 301 gtgtgtctgaagactgcaacagtgtactcacatatataaaataaataaatctttaaaata 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 gtgtgtctgaagactgcaacagtgtactcacatatataaaataaataaatctttaaaata 94
Query: 361 aaaaagaatagaaagaaagggctggagagatatcttatctattaaaagcacttggtgctc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93 aaaaagaatagaaagaaagggctggagagatatcttatctattaaaagcacttggtgctc 34
Query: 421 ttccagaggacctgggttctgatcccagcacca 453
|||||||||||||||||||||||||||||||||
Sbjct: 33 ttccagaggacctgggttctgatcccagcacca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space: 512049
Effective search space used: 512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
