Query= MSMg01no533_j24.b1 MSMg01no533_j24.b1 CHROMAT_FILE:
MSMg01no533_j24.b1 PHD_FILE: MSMg01no533_j24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:52 2005
(575 letters)
>mm_chr11_75613824_75614798
Length = 975
Score = 1062 bits (549), Expect = 0.0
Identities = 567/573 (98%), Gaps = 1/573 (0%)
Strand = Plus / Plus
Query: 4 ggaattc-ctatgtatctgagctgatccttctgctcctgcctctctagtgctgggatcac 62
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattcactatgtagctgagctgatccttctgctcctgcctctctagtgctgggatcac 262
Query: 63 aggatgcatgattgagaaaaccgcctctactcagcagttggctggacatctttgattggt 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aggatgcatgattgagaaaaccgcctctactcagcagttggctggacatctttgattggt 322
Query: 123 atccctagctagtatttgtgtacgtgggggagggaaggctgtggctggttcctgcccact 182
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 323 gtccctagctagtatttgtgtacatgggggagggaaggctgtggctggttcctgcccact 382
Query: 183 cccccactccccacactcacagcttgctcttctttctctgattactgaaggagctcttgc 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 cccccactccccacactcacagcttgctcttctttctctgattactgaaggagctcttgc 442
Query: 243 aaggctggactaacagaactttctttgtattaatggggaattttaacccaaaagagagtc 302
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 aaggctggactgagagaactttctttgtattaatggggaattttaacccaaaagagagtc 502
Query: 303 cggcagagcaactccaaacaccgttgctggttggtggagaggcaccgtccaggggttctt 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 cggcagagcaactccaaacaccgttgctggttggtggagaggcaccgtccaggggttctt 562
Query: 363 gtccgttcatttattcatgactccacacttcaacaaatgtttacccagtatgtcctctgc 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gtccgttcatttattcatgactccacacttcaacaaatgtttacccagtatgtcctctgc 622
Query: 423 aatagctctgcactgcagtctgcagggggctgccatagaaatgaagccccgcatctcttt 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 aatagctctgcactgcagtctgcagggggctgccatagaaatgaagccccgcatctcttt 682
Query: 483 agattctggactgtggagggtaaatcaggagggatgggagtcaggcactcactctgggga 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 agattctggactgtggagggtaaatcaggagggatgggagtcaggcactcactctgggga 742
Query: 543 cacctctcttccttataccttcacctacactga 575
|||||||||||||||||||||||||||||||||
Sbjct: 743 cacctctcttccttataccttcacctacactga 775
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space: 545225
Effective search space used: 545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no533_j24.g1 MSMg01no533_j24.g1 CHROMAT_FILE:
MSMg01no533_j24.g1 PHD_FILE: MSMg01no533_j24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:10:53 2005
(608 letters)
>mm_chr11_75778969_75779976
Length = 1008
Score = 1129 bits (584), Expect = 0.0
Identities = 602/608 (99%)
Strand = Plus / Minus
Query: 1 cgaggtggagcagggcaaagcgacctgattttccacctgtgtgtctgataaaccttagcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 cgaggtggagcagggcaaagcgacctgattttccacctgtgtgtctgataaaccttagcg 749
Query: 61 gttcccttgggggaaaggtggggggatgctgaaagtggaaaccggatctcagtgagactt 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 gttcccttgggggaaaggttgggggatgctgaaagtggaaaccggatctcagtgagactt 689
Query: 121 gagccagtgggatccaggggaaaagtagctgtcagtcgggttgtgcagccggcaagcttt 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 gagccagtggggtccaggggaaaagtagctgtcagtcgggttgtgcagccggcaagcttt 629
Query: 181 gatcctcggggcagcagagggcaggggagggaaaggggcattcctgaggccccagagcaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 gatcctcggggcagcagagggcaggggagggaaaggggcattcctgaggccccagagcaa 569
Query: 241 ggcgaaagcctcttggagaagccggcccctatagttcaggctctgtctcgcccccaccct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 ggcgaaagcctcttggagaagccggcccctatagttcaggctctgtctcgcccccaccct 509
Query: 301 aagagattgctccttccatcgctgcctccgagggccacttggctcccaactgaaaaaagc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 aagagattgctccttccatcgctgcctccgagggccacttggctcccaactgaaaaaagc 449
Query: 361 aggaacatgaggtgatctgtaagctttgctcaccgccacatctcccacaattgctctgca 420
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 448 aggaacatgaggtgatctgtaagctttgctcaccgccacatttcccacaagtgctctgca 389
Query: 421 cctgctgctgtcctcttccttaaccctgcagcccagactgctgtcctgccactcagcaga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 cctgctgctgtcctcttccttaaccctgcagcccagactgctgtcctgccactcagcaga 329
Query: 481 ggctaactggctttccagtgagcctctctcgctccctcctatacccactccctacccatc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ggctaactggctttccagtgagcctctctcgctccctcctatacccactccctacccatc 269
Query: 541 gcggagggggagttctggggaggggggcgtctactttgcagccttccctaccggtggtct 600
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 268 gcggagggggagttctggggagggggacgtctattttgcagccttccctaccggtggtct 209
Query: 601 ttatttct 608
||||||||
Sbjct: 208 ttatttct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1008
Length adjustment: 10
Effective length of query: 598
Effective length of database: 998
Effective search space: 596804
Effective search space used: 596804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
