Query= MSMg01no533_m19.b1 MSMg01no533_m19.b1 CHROMAT_FILE:
MSMg01no533_m19.b1 PHD_FILE: MSMg01no533_m19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:06 2005
(624 letters)
>mm_chr11_11332193_11333215
Length = 1023
Score = 1116 bits (577), Expect = 0.0
Identities = 610/621 (98%), Gaps = 3/621 (0%)
Strand = Plus / Plus
Query: 5 gaattcaaaagtcttgctttataaaagatcactgacattaaataatcattcaaatgtatg 64
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 205 gaattcaaaagtcttgctttataaaagatcactgacattaaataag-attcaaatgtatg 263
Query: 65 aaagaagtcaattcaagacctggatgagaaagacaataacctagacaaaattttttt-ct 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 264 aaagaagtcaattcaagacctggatgagaaagacaataacctagacaaaattttttttct 323
Query: 124 tttttttttaactttttccaattttttattaggtattttcttcatttacatttcaatgct 183
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tttttttt-aactttttccaattttttattaggtattttcttcatttacatttcaatgct 382
Query: 184 atcctgaaagtcccctataccttccccctaccttgctcccctacccacccattcccactt 243
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 383 atcctgaaagacccctataccttccccctaccctgctcccctacccacccattcccactt 442
Query: 244 cttggtcctggtgttcccctgaactgggacatataaagtttgcaagaccaaggggcctct 303
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 443 cttggccctggtgttcccctgaactgggacatataaagtttgaaagaccaaggggcccct 502
Query: 304 cttcccaatgatggccaactaggccatcttctgctacatatgcagctagagacacaagct 363
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 cttcccaatggtggccaactaggccatcttctgctacatatgcagctagagacacaagct 562
Query: 364 ctgggggtactggttagtttgtactgtagtcccacctatagggttgtagaccccttcagc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ctgggggtactggttagtttgtactgtagtcccacctatagggttgtagaccccttcagc 622
Query: 424 tccttgggtactttctctagctcctccattgggggccctgtgttccatccaatagctgac 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tccttgggtactttctctagctcctccattgggggccctgtgttccatccaatagctgac 682
Query: 484 tgtgagcattcacttctgtgtttgccaggcactgtcatagcctcacgagagacagctata 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tgtgagcattcacttctgtgtttgccaggcactgtcatagcctcacgagagacagctata 742
Query: 544 tcagggtcctttcagcaaaatcttgctggcatatgcaatggtgtctgtgtttggaggctg 603
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 tcagggtcctttcaggaaaatcttgctggcatatgcaatggtgtctgtgtttggaggctg 802
Query: 604 attatgggatgaaacccaaga 624
|||||||||||||||||||||
Sbjct: 803 attatgggatgaaacccaaga 823
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1023
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1013
Effective search space: 621982
Effective search space used: 621982
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no533_m19.g1 MSMg01no533_m19.g1 CHROMAT_FILE:
MSMg01no533_m19.g1 PHD_FILE: MSMg01no533_m19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:06 2005
(603 letters)
>mm_chr11_11520993_11521998
Length = 1006
Score = 799 bits (413), Expect = 0.0
Identities = 465/485 (95%), Gaps = 7/485 (1%)
Strand = Plus / Minus
Query: 1 catggatcttcctgcccctagctccctagtgttgagatgtgcatgtcactgcacccagcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 catggatcttcctgcccctagctccctagtgttgagatgtgcatgtcactgcacccagcc 428
Query: 61 ttctgtgggagagtatccaaattcaggttcttatgcctgtacttcatttaaagtggtttt 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 427 ttctgtgggagagtatccaaattcaggtttttatgcctgtacttcatttaaag-ggtttt 369
Query: 121 t----ttttgatagagatatcaaaatgagaatagtgtgtttgtatcttattacaaacatt 176
| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 368 ttttcttttgatagagatatcaaactgagaatagtgtgtttgtatcttattacaaacatt 309
Query: 177 acaaagcattgtcaaaaatgtttagttaaagtttgcaaaaacatcctaaattattcttta 236
||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 308 acaaagcattgccaaaaatgtttagttaaagtttgcaaaatcatcctaaattattcttta 249
Query: 237 aaagaatagctatttgaaagtgagtctcaaacatagtctacaaatgtcatatttattttt 296
|||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||
Sbjct: 248 aaagaatagctatttgaaagtgtgtctcaaacatagtctataaatgtcatattaattttt 189
Query: 297 attaaaaattgctcttatgccagcatttattaaaattttttatgtccatagtatttttgt 356
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct: 188 attaaaaattgctcttatgccagaatttattaaaattttttatgtctatagtatttttgt 129
Query: 357 gcccacaaacttattttttttaattattaggtttttttt--ttttttttttttggctttt 414
||||||| ||||||||||||| |||||||| |||||||| |||||||||||||||||||
Sbjct: 128 gcccacagacttatttttttttattattagtttttttttgtttttttttttttggctttt 69
Query: 415 tgagacagggtttctctgtatagctctggctgtcctggaactcactttgtagaccaggct 474
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 68 tgagacagggtttctctgtatagccctggctgtcctggaactcactttgtagaccaggct 9
Query: 475 ggcct 479
|||||
Sbjct: 8 ggcct 4
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1006
Length adjustment: 10
Effective length of query: 593
Effective length of database: 996
Effective search space: 590628
Effective search space used: 590628
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
