BAC Information

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BAC

Clone NameMSMg01-534A12
Chromosome11 (Build37)
Map Location 18,752,318 - 18,932,648
singlet/doubletdoublet
Overlap geneMeis1
Upstream geneEtaa1, LOC327871, LOC627696, LOC627716, LOC665796
Downstream geneLOC635455, LOC100042708, Glns-ps1, LOC665868, LOC100041937, Spred2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-534A12.T7 (MSMg01no534_a12.b1)MSMg01-534A12.TJ (MSMg01no534_a12.g1)
ACCAG601813AG601814
length730778
length of high quality
(start - end)		624 (46 - 669)174 (74 - 247)
definitionCHROMAT_FILE: MSMg01no534_a12.b1 PHD_FILE: MSMg01no534_a12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:11:23 2005CHROMAT_FILE: MSMg01no534_a12.g1 PHD_FILE: MSMg01no534_a12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:11:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,752,318 - 18,752,937)(18,932,486 - 18,932,648)
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTCATGCAACATAAGGAAACTGTGAACGGTATGTGTATTTAGTAT
TGAGTGGGCCACCATATTCTAGAGAAGAATGACAGCCTTAATCACATTAA
TACTGTTTAAATTTTCTCTCCTGGGTAGTTACAAACAAAATGCAAAAATA
TTCATCAAGTAGATTAACCTTATCCAGTTTAAAGAACCTGGGGAATAAGA
GAACCTCACTGACTAGTCGTCTGAAACGTGTCTTTCACCATATTCCCACT
ACTGATGAATTAAGGATATGAAGGCAGCTTTATCTTTTATTTCTTGAAAA
ATATTATTTGCTGTACTATGTGCACAGTCCACAATGACTAGGAATTAGAG
CTGGCGTGTTATAATTTTCCCTGCTATTTCTATAGATGATTTACACCAAA
AAATCCTTTTCAGTGGAAATAATCAAAATTAAAGTATGGTACGTTACTGT
GGCATGTTGCTGAAGCCCTTGATGAAACAACCCTAGAAGACCAAGGATGA
TGTAAAAGGAATACAGGAAATTCACTGTCTGCTCAGAGAGTTGATAATTC
AAACTGAATTGAATTGCTGATTGTTGTATAGGCTGAGTTCATTTTGTCTG
GCAAGTTTTCTTTACAGAAGATCATAAGAGCTCACTGGGAACCTTTGACT
GGGGAGTAATAGGTAACCGCATGTCATATN

TGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTAAGCATCTAGAATTGTTCTAACAG
TGTATGTACTCTAGAGACTATATTCTCAAATAGTAGGTAAGCTAGAGACA
ATATAGTGGGAGCGAGTGATAACTTAAAAACAACTGTCCAGGCAGTGGTG
GTGCATGCCTTTAATCCTAGCGTTTGGGGATGGGGGGGGGGGGGCGGTTT
TTNTNTNATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TCCTCCCNCTTTTTTTTTTTTCTCTTTTCCCTCCTCTCTTTCCTTCTCCT
TTTTTTTTTTCTCTTCCTTCTCTTAACCTCTGTCTCTTTTTTCTTTTTTT
TCTTTTTTTTTTCTCTTCCCCCCCCTTTCTTTTTCTTTTTTCTCTCCTCT
TTTATTCTTCACTCCCCATTTTTTATCTATCCATTATCATTCTTGTTTTT
TTTATCCCGCTCTCTAGTCCTTACTTTTTTTTTTTTTTTGCCTGCCCACA
TCCTTACTTTTTATACTAAATATTCGCTCGCCTTGCTCGTTTTTTACATA
CCATATATATACTATTGCGTATTTTTTTTTTATCTTTTTTTTTTCTCCGT
CTTTCATCCTTTTTTTTTTACTCTCCTTTCCCTCGTCCAGTTTATTCTTT
CTTACTTTTGGTTTCTTTCCCTTTTTTTTTTCCAACGTCTCTTTTTTTTC
CCACTATTCTATTTTTTTCCTCCCCTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no534_a12.b1 MSMg01no534_a12.b1 CHROMAT_FILE:
MSMg01no534_a12.b1 PHD_FILE: MSMg01no534_a12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:23 2005
         (624 letters)



>mm_chr11_18752114_18753137
          Length = 1024

 Score = 1191 bits (616), Expect = 0.0
 Identities = 619/620 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttcatgcaacataaggaaactgtgaacggtatgtgtatttagtattgagtgggc 64
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttcaggcaacataaggaaactgtgaacggtatgtgtatttagtattgagtgggc 264

                                                                       
Query: 65  caccatattctagagaagaatgacagccttaatcacattaatactgtttaaattttctct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caccatattctagagaagaatgacagccttaatcacattaatactgtttaaattttctct 324

                                                                       
Query: 125 cctgggtagttacaaacaaaatgcaaaaatattcatcaagtagattaaccttatccagtt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cctgggtagttacaaacaaaatgcaaaaatattcatcaagtagattaaccttatccagtt 384

                                                                       
Query: 185 taaagaacctggggaataagagaacctcactgactagtcgtctgaaacgtgtctttcacc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 taaagaacctggggaataagagaacctcactgactagtcgtctgaaacgtgtctttcacc 444

                                                                       
Query: 245 atattcccactactgatgaattaaggatatgaaggcagctttatcttttatttcttgaaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atattcccactactgatgaattaaggatatgaaggcagctttatcttttatttcttgaaa 504

                                                                       
Query: 305 aatattatttgctgtactatgtgcacagtccacaatgactaggaattagagctggcgtgt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aatattatttgctgtactatgtgcacagtccacaatgactaggaattagagctggcgtgt 564

                                                                       
Query: 365 tataattttccctgctatttctatagatgatttacaccaaaaaatccttttcagtggaaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tataattttccctgctatttctatagatgatttacaccaaaaaatccttttcagtggaaa 624

                                                                       
Query: 425 taatcaaaattaaagtatggtacgttactgtggcatgttgctgaagcccttgatgaaaca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 taatcaaaattaaagtatggtacgttactgtggcatgttgctgaagcccttgatgaaaca 684

                                                                       
Query: 485 accctagaagaccaaggatgatgtaaaaggaatacaggaaattcactgtctgctcagaga 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 accctagaagaccaaggatgatgtaaaaggaatacaggaaattcactgtctgctcagaga 744

                                                                       
Query: 545 gttgataattcaaactgaattgaattgctgattgttgtataggctgagttcattttgtct 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gttgataattcaaactgaattgaattgctgattgttgtataggctgagttcattttgtct 804

                               
Query: 605 ggcaagttttctttacagaa 624
           ||||||||||||||||||||
Sbjct: 805 ggcaagttttctttacagaa 824


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space:   622596
Effective search space used:   622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no534_a12.g1 MSMg01no534_a12.g1 CHROMAT_FILE:
MSMg01no534_a12.g1 PHD_FILE: MSMg01no534_a12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:23 2005
         (174 letters)



>mm_chr11_18932335_18932908
          Length = 574

 Score =  277 bits (143), Expect = 3e-79
 Identities = 158/163 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttaagcatctagaattgttctaacagtgtatgtactctagagactatattctcaaatag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 tttaagcatctagaattgttctaacagtgtatgtactctagagactatattctcaaatag 255

                                                                       
Query: 61  taggtaagctagagacaatatagtgggagcgagtgataacttaaaaacaactgtccaggc 120
           |||||| |||||||||||||||||| ||| |||| |||| ||||||||||||||||||||
Sbjct: 254 taggtacgctagagacaatatagtgagagtgagtaataatttaaaaacaactgtccaggc 195

                                                      
Query: 121 agtggtggtgcatgcctttaatcctagcgtttggggatggggg 163
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 agtggtggtgcatgcctttaatcctagcgtttggggatggggg 152


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 174
Length of database: 574
Length adjustment: 8
Effective length of query: 166
Effective length of database: 566
Effective search space:    93956
Effective search space used:    93956
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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