Query= MSMg01no534_g14.b1 MSMg01no534_g14.b1 CHROMAT_FILE:
MSMg01no534_g14.b1 PHD_FILE: MSMg01no534_g14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:55 2005
(486 letters)
>mm_chr11_4925729_4926614
Length = 886
Score = 688 bits (356), Expect = 0.0
Identities = 427/482 (88%), Gaps = 51/482 (10%)
Strand = Plus / Plus
Query: 5 gaattccaggacagccagggaaagtctcaaaatgaaaccaaaccacaccccacaccccac 64
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 256 gaattccaggacagccagggaaagtctcaaaatgaaaccaaaccacaccccacacccc-c 314
Query: 65 tctcactctctctctctctctctctctctctctctctctctctctcacacacacacacac 124
| || | | |||||||||||||||||||||||||||||||
Sbjct: 315 t---accc-------------------cactctctctctctctctcacacacacacacac 352
Query: 125 acacacacacacacacacacacacacacacacacacacacacatacgcacacacactatc 184
|||||||||||||||||||||||||||| ||||
Sbjct: 353 acacacacacacacacacacacacacac----------------------------tatc 384
Query: 185 cttagctcctctctctcccttcctcccccaccccctccttagctacacacactccctctc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cttagctcctctctctcccttcctcccccaccccctccttagctacacacactccctctc 444
Query: 245 ctcagcttctctccagatctgggaagctgcatgtcttcattggtgctcacatactggctc 304
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 445 ctcagcttctctccagatctgggaagctgcatgtcttcattggtgctcacgtactggctc 504
Query: 305 aatcatgcttcccaggtatgagagtgtgatagctacactgtgtgagaatctggactcgct 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 505 aatcatgcttcccaggtatgagagtgtgatagctacactgtgtgagaatctggactctct 564
Query: 365 ggatgagcctgaggcccgagccgctatgatctggatagtgggcgagtatgccgagcggat 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ggatgagcctgaggcccgagccgctatgatctggatagtgggcgagtatgccgagcggat 624
Query: 425 tgacaatgcagacgagctgctcgagagcttcctggaaggtttccatgatgagagcactca 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgacaatgcagacgagctgctcgagagcttcctggaaggtttccatgatgagagcactca 684
Query: 485 gg 486
||
Sbjct: 685 gg 686
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 24
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 886
Length adjustment: 10
Effective length of query: 476
Effective length of database: 876
Effective search space: 416976
Effective search space used: 416976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no534_g14.g1 MSMg01no534_g14.g1 CHROMAT_FILE:
MSMg01no534_g14.g1 PHD_FILE: MSMg01no534_g14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:55 2005
(428 letters)
>mm_chr11_5065310_5066137
Length = 828
Score = 820 bits (424), Expect = 0.0
Identities = 427/428 (99%)
Strand = Plus / Minus
Query: 1 catcaccctcattttacaaaggagatgaccaagacaaggaagcaagaagcctaaggtgac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 catcaccctcattttacaaaggagatgaccaagacaaggaagcaagaagcctaaggtgac 629
Query: 61 ccagccagtggcagggccaggattcaacgggaggccattgccttggggactgcctggctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 ccagccagtggcagggccaggattcaacgggaggccattgccttggggactgcctggctc 569
Query: 121 aggcgctcttcctgaagtcctgtcagagcctgccaggggacagcaaacaggctccagatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 aggcgctcttcctgaagtcctgtcagagcctgccaggggacagcaaacaggctccagatg 509
Query: 181 gctgttcccgcacttgccaggctgggctccacttgaaaccccagccagtttctaaatgta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 gctgttcccgcacttgccaggctgggctccacttgaaaccccagccagtttctaaatgta 449
Query: 241 tcccagccggctgagctgggaatgtctggggctcccctgctggggcggtagggacaaagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tcccagccggctgagctgggaatgtctggggctcccctgctggggcggtagggacaaagg 389
Query: 301 aggccctggccacacaggggtctggaagggcttggtcccagccctggcttcatctcttct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 aggccctggccacacaggggtctggaagggcttggtcccagccctggcttcatctcttct 329
Query: 361 gaggcccaggcaccctcctgcgggtcctggagcttgggcctcacacacacacacacacac 420
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 328 gaggcccaggcaccctcctgcgggtccaggagcttgggcctcacacacacacacacacac 269
Query: 421 acacacac 428
||||||||
Sbjct: 268 acacacac 261
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 12
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 828
Length adjustment: 9
Effective length of query: 419
Effective length of database: 819
Effective search space: 343161
Effective search space used: 343161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
