Query= MSMg01no534_k19.b1 MSMg01no534_k19.b1 CHROMAT_FILE:
MSMg01no534_k19.b1 PHD_FILE: MSMg01no534_k19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:16 2005
(641 letters)
>mm_chr11_92807467_92808509
Length = 1043
Score = 1062 bits (549), Expect = 0.0
Identities = 618/641 (96%), Gaps = 4/641 (0%)
Strand = Plus / Plus
Query: 4 ggaattcaaaatgagagatgaaggctgcggggaaaggaaatggatctggacaccaaatac 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaaaatgagagatgaaggctgcggggaaaggaaatggatctggacaccaaatac 263
Query: 64 tatgtggagattgatgcaaattcaataaaatacctttcacaggctgattgaccaaattta 123
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tatttggagattgatgcaaattcaataaaatacctttcacaggctgattgaccaaattta 323
Query: 124 gtgtcatggttgtcatgtgggactgaacaagggtcaagaggcaatgtccccttatgaacc 183
||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 324 gtgccatggttgtcatgtgggaccgaacaagggtcaagaggcaatgtccccttatgaacc 383
Query: 184 aatgttcctgtaacagagtcaagcacttgaataataatgac-ttttaatcagcttgtggt 242
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct: 384 aatgttcctgtaacagagtcaagcacttgaataataatgactttttaatcagcttgtgtt 443
Query: 243 gaataaacaagaaagaagacctctgttaggtcattctgttctcaatatacagggaatata 302
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gaataaacaagaaagaagacctctgttaggtcattctgttctcaatatacagggaatatg 503
Query: 303 aggaaaggaatgacattattttcatctaatttaagaatattagactctgaaattaaaatg 362
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 504 aggaaaggaatgacattatttttatctaatttaagaatattagactctgaaattacaatg 563
Query: 363 gaaatatttgttcagaaaatctccttttataaataaggagatctaaaagaaaagtgattt 422
||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 564 gaaatatttgttcaggaaatctccttttataaataaggggatctaaaagaaaagtgattt 623
Query: 423 gctcagtgtcaacatattgagaggcagggcagacctcaagtctctagcttggaagcctag 482
||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 624 gctcattgtctacatattgagaggcagggcagacctcaagtctctagcttagaagcctag 683
Query: 483 atgcaataccttta-atcta-catatgctttctgagttaataatcttccatggtccatac 540
|||||||||||||| || | ||| ||||||||||||||||||||||||||||||||||
Sbjct: 684 atgcaatacctttacat-tggcatgtgctttctgagttaataatcttccatggtccatat 742
Query: 541 aacactttactaaatgccttggtgtcttagttacctttctattgctgtgaagaaatagca 600
||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 aacacattaccaattgccttggtgtcttagttacctttctattgctgtgaagaaatagca 802
Query: 601 ataccaagacatgaccaaaagtttattgaggctcatgtttc 641
|||||||||||||||||| ||||||||||||||||||||||
Sbjct: 803 ataccaagacatgaccaagagtttattgaggctcatgtttc 843
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1043
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1033
Effective search space: 651823
Effective search space used: 651823
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no534_k19.g1 MSMg01no534_k19.g1 CHROMAT_FILE:
MSMg01no534_k19.g1 PHD_FILE: MSMg01no534_k19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:16 2005
(547 letters)
>mm_chr11_92964077_92965023
Length = 947
Score = 1019 bits (527), Expect = 0.0
Identities = 542/547 (99%)
Strand = Plus / Minus
Query: 1 aatcaggcagctgtctttggaccaggaaattccctcttgttcagctcagcatccattctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 887 aatcaggcagctgtctttggaccaggaaattccctcttgttcagctcagcatccattctc 828
Query: 61 actgagctgagcagtgagaaagggaatggtcctctagctagcacagaggaaaaacacatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 827 actgagctgagcagtgagaaagggaatggtcctctagctagcacagaggaaaaccacatt 768
Query: 121 cattctcatttctctcttccctacctttcttctcttcctctcacccttctttcctctttc 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 767 cattctcatttctctcttcccttcctttcttctcttcctctcacccttctttcctctttc 708
Query: 181 ttcccttcctggtctctttacaaatccctgctaccttacatctttagccaaatgacattt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 ttcccttcctggtctctttacaaatccctgctaccttacatctttagccaaatgacattt 648
Query: 241 ccattatgtttccagaccatggcattcctctctaagccctgttgtgctgtctctaacttg 300
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 647 ccattatgtttccagaccatggcattcctctctaagccctgttgtgctgtcgctaacttg 588
Query: 301 ccaaaattggtaggatccctccagtggacgatatgcatgctccttcctcagcagcaaggt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 ccaaaattggtaggatccctccagtggacgatatgcatgctccttcctcagcagcaaggt 528
Query: 361 aaccctggccaaatgggcttagtccttatgccaaccagattatttcagcagagcaacaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 aaccctggccaaatgggcttagtccttatgccaaccagattatttcagcagagcaacaaa 468
Query: 421 acagaccaagcctgagcatctatattttgtatgacatagccaaataaaggatagaaagag 480
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 467 acagaccaagcctgagcatctatattttatatgacatagccaaataaaggatagaaagag 408
Query: 481 caaactcccccctcctctgtgtgtttgagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 540
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 407 caaactcccccctcctctgtgtgtttgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 348
Query: 541 gtgtgtg 547
|||||||
Sbjct: 347 gtgtgtg 341
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space: 503169
Effective search space used: 503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
