BAC Information

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BAC

Clone NameMSMg01-534N16
Chromosome11 (Build37)
Map Location 40,446,626 - 40,596,514
singlet/doubletdoublet
Overlap geneLOC432549, Mat2b, Hmmr, Nudcd2, Ccng1
Upstream geneLOC100039241, LOC382508
Downstream geneLOC100039256, LOC100039285, Hspd1, LOC100039292
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-534N16.T7 (MSMg01no534_n16.b1)MSMg01-534N16.TJ (MSMg01no534_n16.g1)
ACCAG602442AG602443
length770769
length of high quality
(start - end)		646 (36 - 681)595 (68 - 662)
definitionCHROMAT_FILE: MSMg01no534_n16.b1 PHD_FILE: MSMg01no534_n16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:12:30 2005CHROMAT_FILE: MSMg01no534_n16.g1 PHD_FILE: MSMg01no534_n16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:12:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,446,626 - 40,447,268)(40,596,101 - 40,596,514)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAGTC
TCTTCCTGGCTGCCTTCAAACCAAGACGTAGAACTCTCAGCTCCTCCAGT
ACCATATCTACCTGAATACTGCTATGGTTCATGCCTTAACAATAATGGAC
TAAGCCCCAATTAAATGTTGTATTTTATAAGAGTTGACCTGGTCATGGTG
TCGCTTCAGAAACAATGGAAAACCTAATTAAGATAGAGTCCATGACCATC
ATGGCAGAGAGCATAGCAATAGACACATAACTGGACAGTTATTTTTAGAA
AAAAAATCTTGTTGTACAGGACTATCCTCCAGGCCAAATTGCTACCGTCA
TCATCAAAACTGCTCATATAAGATCATCTCAGCTGGCCTTGACTCTTTAC
CTTCCCTCATAGCAAGAGGGGGTAAAGACGAGGGTCATGGGACCTTTGCC
TAAACACCCAGTCACCCCTCACAACAAGCTATTTATAATTCTACACTAAT
TACAAGAAAGATAGATGAGAGATGTAGTATATGGATGGAGAGTGACTGAA
GAGGGGGTTCCAGTCTATGCATCTATGAGAAAGCTATCAGCCTTACTGAC
TAAAGACTTTCTGGTGCAATCTTTTGTGGGATCGGTGCAGCACCCACAGT
CCTGTAAGTACCCTTCCACATATGTTTCCTAAGGAAGCCCAATAAATTCA
TTAGGTCTCCCGAGTGAACTCTAGTGGAATCTAACATGCCTCAGTTTATT
TGGTGGGACCTTATACAGAG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTGTTGGTCTATCAGAGGTCAACTGTCCTTGCTC
CCAACCAGGGCTGATAATTAGTTGTTTCAACATTGGCAGGAGGGATAAAA
GTCTATTTAATATGCTAACTACGGGACTGTTAATTTTTCTTCAATAAGTT
TTTAGTCATAGACAGCCAAGGGACCAAAGGGAAAAGATAGTATGTTAAAA
TGAGCTGAGTAGGTGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACATGT
TCTTCTTGCAGAGAACCTGGGTTTGGTTCCCAGTGCCTCGGACAGCTCAC
AGTCACTTTTAACTCCAGATCCAGTGGATCTTACAACCTCTTTGGGTTTC
TGTGGGCACCCCATTCATAGACACATACCCATGCAGAAAAATACACATAT
CCATGTAATTAAAAATAAACTGAAAGTCATAAAGAGATGTCACAGCTTCC
TTAGCCATCATCCTAGACTAAAACAAGTATTTAATTTAGGTTCGTTATTC
CAAAGAGAAGGTGTGCATAAGAAAGAGGGGTTCCACAAAACACCCATGGA
AGTAGTTACAGAGACGGAGTTTGGAGCTGAGATGAAAGGATGGACCATGT
AGAGACTGCCATAGCCAGGGATCCACCCCATAATCAGCATCCAAACGCTG
ACACCATTGCATACACTAGCAAGATTTTATTTGAAGGACGCAAATGTAGC
TGTCTCTTGTGAGACTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no534_n16.b1 MSMg01no534_n16.b1 CHROMAT_FILE:
MSMg01no534_n16.b1 PHD_FILE: MSMg01no534_n16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:30 2005
         (646 letters)



>mm_chr11_40446423_40447468
          Length = 1046

 Score = 1212 bits (627), Expect = 0.0
 Identities = 639/643 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccagtctcttcctggctgccttcaaaccaagacgtagaactctcagctcctcca 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccagtctcttcctggctgccttcaaaccaagacgtagaactctcagctcctcca 263

                                                                       
Query: 64  gtaccatatctacctgaatactgctatggttcatgccttaacaataatggactaagcccc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gtaccatatctacctgaatactgctatggttcatgccttaacaataatggactaagcccc 323

                                                                       
Query: 124 aattaaatgttgtattttataagagttgacctggtcatggtgtcgcttcagaaacaatgg 183
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 324 aattaaatgttgtattttataagagttgacctggtcatggtgtctcttcagaaacaatgg 383

                                                                       
Query: 184 aaaacctaattaagatagagtccatgaccatcatggcagagagcatagcaatagacacat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aaaacctaattaagatagagtccatgaccatcatggcagagagcatagcaatagacacat 443

                                                                       
Query: 244 aactggacagttatttttagaaaaaaaatcttgttgtacaggactatcctccaggccaaa 303
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 444 aactggacagttatttttagaaaaaaaatcttgttgtacaagactatcctccaggccaaa 503

                                                                       
Query: 304 ttgctaccgtcatcatcaaaactgctcatataagatcatctcagctggccttgactcttt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttgctaccgtcatcatcaaaactgctcatataagatcatctcagctggccttgactcttt 563

                                                                       
Query: 364 accttccctcatagcaagagggggtaaagacgagggtcatgggacctttgcctaaacacc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 accttccctcatagcaagagggggtaaagacgagggtcatgggacctttgcctaaacacc 623

                                                                       
Query: 424 cagtcacccctcacaacaagctatttataattctacactaattacaagaaagatagatga 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cagtcacccctcacaacaagctatttataattctacactaattacaagaaagatagatga 683

                                                                       
Query: 484 gagatgtagtatatggatggagagtgactgaagagggggttccagtctatgcatctatga 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gagatgtagtatatggatggagagtgactgaagagggggttccagtctatgcatctatga 743

                                                                       
Query: 544 gaaagctatcagccttactgactaaagactttctggtgcaatcttttgtgggatcggtgc 603
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 744 gaaagctatcagccttactgactaaagactttctgatgcaatcttttgtgggatcggtgc 803

                                                      
Query: 604 agcacccacagtcctgtaagtacccttccacatatgtttccta 646
           ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 804 agcacccacagtcctgtaagtacccttccacgtatgtttccta 846


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1046
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1036
Effective search space:   658896
Effective search space used:   658896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no534_n16.g1 MSMg01no534_n16.g1 CHROMAT_FILE:
MSMg01no534_n16.g1 PHD_FILE: MSMg01no534_n16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:30 2005
         (595 letters)



>mm_chr11_40595520_40596514
          Length = 995

 Score =  777 bits (402), Expect = 0.0
 Identities = 411/414 (99%)
 Strand = Plus / Minus

                                                                       
Query: 105 cgggactgttaatttttcttcaataagtttttagtcatagacagccaagggaccaaaggg 164
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 995 cgggactgttaatttttcttcaataagtttttagtcatagacagccaagggaccaaaggg 936

                                                                       
Query: 165 aaaagatagtatgttaaaatgagctgagtaggtggctggagagatggctcagtggttaag 224
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 935 aaaagatagtatgttaaaatgagctgagtaggtggctggagagatggctcagtggttaag 876

                                                                       
Query: 225 agcacatgttcttcttgcagagaacctgggtttggttcccagtgcctcggacagctcaca 284
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 875 agcacatgttcttcttgcagagaacctgggtttggttcacagtgcctcggacagctcaca 816

                                                                       
Query: 285 gtcacttttaactccagatccagtggatcttacaacctctttgggtttctgtgggcaccc 344
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 815 gtcacttttaactccagatccagtggatcttacaacctctttgggtttctgtgggcacca 756

                                                                       
Query: 345 cattcatagacacatacccatgcagaaaaatacacatatccatgtaattaaaaataaact 404
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 cattcatagacacatacccatgcagaaaaatacacatatccatgtaattaaaaataaact 696

                                                                       
Query: 405 gaaagtcataaagagatgtcacagcttccttagccatcatcctagactaaaacaagtatt 464
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 gaaagtcataaagagatgtcacagcttccttagccatcatcctagactaaaacaagtatt 636

                                                                 
Query: 465 taatttaggttcgttattccaaagagaaggtgtgcataagaaagaggggttcca 518
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 635 taatttaggttcgttattccaaagagaaggtgtgcataagaaaaaggggttcca 582


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space:   576225
Effective search space used:   576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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