BAC Information

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BAC

Clone NameMSMg01-535K19
Chromosome11 (Build37)
Map Location 68,669,189 - 68,836,287
singlet/doubletdoublet
Overlap gene9930039A11Rik, Rpl26, Odf4, Arhgef15, Slc25a35, 2400006H24Rik, Pfas, 1500010J02Rik
Upstream geneUsp43, Wdr16, Stx8, Ntn1, Pik3r5, BB220380, BC024997, Ccdc42, Myh10, Ndel1
Downstream geneAurkb, 2310047M10Rik, Tmem107, Vamp2, Per1, Hes7, Aloxe3, Alox12b, Alox8, Gucy2e, Cntrob, Trappc1, Kcnab3, A030009H04Rik, Chd3, Cyb5d1, Lsmd1, Tmem88, Jmjd3, Dnahc2, Efnb3, Wdr79, LOC100043030, Trp53, Atp1b2, Shbg, Sat2, LOC382532, Fxr2, Sox15, Mpdu1, Cd68, Eif4a1, Senp3, Tnfsf12-tnfsf13, Tnfsf13, Tnfsf12, LOC100041994, Polr2a, Amac1, Zbtb4, Chrnb1, Fgf11, Tmem102, 4933402P03Rik, 1700095G12Rik, Nlgn2, 1810027O10Rik, Plscr3, Tnk1, LOC432576, Kctd11, Centb1, 2810408A11Rik, 0610025P10Rik, Gps2, Eif5a, Ybx2, Slc2a4, LOC668442, Cldn7, Rai12, Dullard, Gabarap, Phf23, Dvl2, Acadvl, Dlg4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-535K19.T7 (MSMg01no535_k19.b1)MSMg01-535K19.TJ (MSMg01no535_k19.g1)
ACCAG603068AG603069
length758763
length of high quality
(start - end)		681 (50 - 730)656 (78 - 733)
definitionCHROMAT_FILE: MSMg01no535_k19.b1 PHD_FILE: MSMg01no535_k19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:13:33 2005CHROMAT_FILE: MSMg01no535_k19.g1 PHD_FILE: MSMg01no535_k19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:13:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,669,189 - 68,669,865)(68,835,632 - 68,836,287)
sequence
NNNAACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCTAGAATTATTTACATGCTCTCAGCTGTGCTATGTTCTAG
TCATGAAAACACAAACTTTTCATCGAATCTCCTGTAATGGTCCCCTGCCT
GGCTTTCAGTTCACCAGTGTGGTCACCACACAGTCTCAACTTTCCCCTTA
CAAACTCAAGTTCGTTCATTTTTCCACTTTATTCTGCCTGCATCTCCCTC
CTGCTTACCTGTTTATCTATTGCCTCCTATTCATCTCCACCCCAATCTCC
CTCCCTTGAACGACTTCTTGTTCCACCCTAGCGGTCTCTACATTGCTTTG
AGAATAATATCACTAAAATTCCACTGTATACAGAGCGTCCCTGCTTCCAA
ACTTGATTTGTCTCCTTGCTACTGTTGCCATGAAGGATCAGAGCCCACAC
AGCCGCTCCAACCCACCCTGGCAGTCTGCATCCAGAAGTTCCCCTGAGTC
TAACCAGATGCACCACTGTGTCCCGTTGTGGTTGTCTGAATGAGAATGAC
CCCATGAATGCTTATCTTTGAATGTTTGTTTCCCAGTTGGTGGACTGTTT
AGGGAGGATTACGAGGCATGGGCTTCTTGAAGGAGATGTGTCACCAGGGG
TAGTAGGCTTTAGAGTTTCAAAAGCACATGCCAGACCCAATCTTAATCTT
TCTCTCTGCCTCCTGCCTTGATTCTGAGGATCAGATGTAAGCTCTCAGCT
GCCCTCTG

NNCCCATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTTGGCAGAAGGAAGGTAACT
CCAACTGGGGAATAGGAAGAGATGGCCCAACCAAGAAAGGTCTAGATCAA
TGAGCTAGAAAAGAGCAAAGCCACAGGTTAGCCAGGACCTTAGCAGCTGA
CCTACCGCTCCTGCTCACCCCAGAGGCAGCTGTCCCCTTTCTACTTACCT
CACAGTCCAAGGTCCCAGTGTTATCCCTTACATACAGGCTTCCACTCCTA
CATTCTTGTTCCGAATCTCCCAATAGGTCTACTAGTGTCCCTAAAAGTAT
CAGCTGCTCCCGGGGCAGGACGCCGTCCCCCGGCCGGCCTCCGCGGGTCC
ACGCCTGGTAAGCACTCTGACTCCAGGACAGGTGGCTGCAGCACGGGAGG
CGCTGATGGGTCTTCAGACTCTGTACCGAGACAAAGCTGAAAAGTGAAGA
AAGTCAGCTTCATCCGAGAAAAGACTCCGCCCCGACAGAGCCCCACGCAC
CCTAGACAGGGGCTGAAGGAGAATGGGGACCAAGTGATGGCTGCTGTGAA
ATTAAGGACGGACTCTACATCTAAAGGTTGGGCAATGACTCTAAGGGAAA
CAAGAAACCCTGGGATGAATCTCTCTACAAGGAGACACCAAGAGACATGA
AGTAAACTGCAGGAGCAGTCTGAGAAAATAAATGTGCACAGAGAACACTA
AAGACTCCACAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no535_k19.b1 MSMg01no535_k19.b1 CHROMAT_FILE:
MSMg01no535_k19.b1 PHD_FILE: MSMg01no535_k19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:33 2005
         (681 letters)



>mm_chr11_68668985_68670065
          Length = 1081

 Score = 1270 bits (657), Expect = 0.0
 Identities = 672/677 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctagaattatttacatgctctcagctgtgctatgttctagtcatgaaaacaca 64
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 205 gaattctctagaattatttacatgctctcagttgtgctatgttctagtcatgaaaacaca 264

                                                                       
Query: 65  aacttttcatcgaatctcctgtaatggtcccctgcctggctttcagttcaccagtgtggt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aacttttcatcgaatctcctgtaatggtcccctgcctggctttcagttcaccagtgtggt 324

                                                                       
Query: 125 caccacacagtctcaactttccccttacaaactcaagttcgttcatttttccactttatt 184
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 325 caccacacagtctcaactttccccttacaaactcaagttcattcatttttccactttatt 384

                                                                       
Query: 185 ctgcctgcatctccctcctgcttacctgtttatctattgcctcctattcatctccacccc 244
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 385 ctgcctgcatctccctcctgcttacctgtttatctattgtctcctattcatctccacccc 444

                                                                       
Query: 245 aatctccctcccttgaacgacttcttgttccaccctagcggtctctacattgctttgaga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aatctccctcccttgaacgacttcttgttccaccctagcggtctctacattgctttgaga 504

                                                                       
Query: 305 ataatatcactaaaattccactgtatacagagcgtccctgcttccaaacttgatttgtct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ataatatcactaaaattccactgtatacagagcgtccctgcttccaaacttgatttgtct 564

                                                                       
Query: 365 ccttgctactgttgccatgaaggatcagagcccacacagccgctccaacccaccctggca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ccttgctactgttgccatgaaggatcagagcccacacagccgctccaacccaccctggca 624

                                                                       
Query: 425 gtctgcatccagaagttcccctgagtctaaccagatgcaccactgtgtcccgttgtggtt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gtctgcatccagaagttcccctgagtctaaccagatgcaccactgtgtcccgttgtggtt 684

                                                                       
Query: 485 gtctgaatgagaatgaccccatgaatgcttatctttgaatgtttgtttcccagttggtgg 544
           ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 685 gtctgaatgagaatggccccatgagtgcttatctttgaatgtttgtttcccagttggtgg 744

                                                                       
Query: 545 actgtttagggaggattacgaggcatgggcttcttgaaggagatgtgtcaccaggggtag 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 actgtttagggaggattacgaggcatgggcttcttgaaggagatgtgtcaccaggggtag 804

                                                                       
Query: 605 taggctttagagtttcaaaagcacatgccagacccaatcttaatctttctctctgcctcc 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 taggctttagagtttcaaaagcacatgccagacccaatcttaatctttctctctgcctcc 864

                            
Query: 665 tgccttgattctgagga 681
           |||||||||||||||||
Sbjct: 865 tgccttgattctgagga 881


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1081
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1071
Effective search space:   718641
Effective search space used:   718641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no535_k19.g1 MSMg01no535_k19.g1 CHROMAT_FILE:
MSMg01no535_k19.g1 PHD_FILE: MSMg01no535_k19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:13:33 2005
         (656 letters)



>mm_chr11_68835432_68836487
          Length = 1056

 Score = 1237 bits (640), Expect = 0.0
 Identities = 652/656 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcttggcagaaggaaggtaactccaactggggaataggaagagatggcccaaccaagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 ctcttggcagaaggaaggtaactccaactggggaataggaagagatggcccaaccaagaa 797

                                                                       
Query: 61  aggtctagatcaatgagctagaaaagagcaaagccacaggttagccaggaccttagcagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 aggtctagatcaatgagctagaaaagagcaaagccacaggttagccaggaccttagcagc 737

                                                                       
Query: 121 tgacctaccgctcctgctcaccccagaggcagctgtcccctttctacttacctcacagtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 tgacctaccgctcctgctcaccccagaggcagctgtcccctttctacttacctcacagtc 677

                                                                       
Query: 181 caaggtcccagtgttatcccttacatacaggcttccactcctacattcttgttccgaatc 240
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 676 caaggtcccagtgttatccctcacatacaggcttccactcctacattcttgttccgaatc 617

                                                                       
Query: 241 tcccaataggtctactagtgtccctaaaagtatcagctgctcccggggcaggacgccgtc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 tcccaataggtctactagtgtccctaaaagtatcagctgctcccggggcaggacgccgtc 557

                                                                       
Query: 301 ccccggccggcctccgcgggtccacgcctggtaagcactctgactccaggacaggtggct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 ccccggccggcctccgcgggtccacgcctggtaagcactctgactccaggacaggtggct 497

                                                                       
Query: 361 gcagcacgggaggcgctgatgggtcttcagactctgtaccgagacaaagctgaaaagtga 420
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 gcagcatgggaggcgctgatgggtcttcagactctgtaccgagacaaagctgaaaagtga 437

                                                                       
Query: 421 agaaagtcagcttcatccgagaaaagactccgccccgacagagccccacgcaccctagac 480
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 436 agaaagtcagcttcatccgagaaaagactccgccccgacagagcaccacgcaccctagac 377

                                                                       
Query: 481 aggggctgaaggagaatggggaccaagtgatggctgctgtgaaattaaggacggactcta 540
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 376 aggggctgaaggagaatggggaccaagtgatcgctgctgtgaaattaaggacggactcta 317

                                                                       
Query: 541 catctaaaggttgggcaatgactctaagggaaacaagaaaccctgggatgaatctctcta 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 catctaaaggttgggcaatgactctaagggaaacaagaaaccctgggatgaatctctcta 257

                                                                   
Query: 601 caaggagacaccaagagacatgaagtaaactgcaggagcagtctgagaaaataaat 656
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 caaggagacaccaagagacatgaagtaaactgcaggagcagtctgagaaaataaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space:   675716
Effective search space used:   675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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