Query= MSMg01no536_e08.b1 MSMg01no536_e08.b1 CHROMAT_FILE:
MSMg01no536_e08.b1 PHD_FILE: MSMg01no536_e08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:19 2005
(481 letters)
>mm_chr11_28579567_28580447
Length = 881
Score = 864 bits (447), Expect = 0.0
Identities = 467/481 (97%), Gaps = 12/481 (2%)
Strand = Plus / Minus
Query: 1 attttccctcatttgcctcacaaaagctctgctaggggatttcttttgtgctatgggtct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854 attttccctcatttgcctcacaaaagctctgctaggggatttcttttgtgctatgggtct 795
Query: 61 gtcctgattaccttgtggttcttagtcctgaatccaagcctctggtaaggtctgctcaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 gtcctgattaccttgtggttcttagtcctgaatccaagcctctggtaaggtctgctcaac 735
Query: 121 agaggagtttgtggaagtcagctgcaggagggtttgtggagtgtgatgcagtagcccaga 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 agaggagtttgtggaagtcagctgcaggagggtttgtggagtgtgatgcagta------- 682
Query: 181 tattcgtagtaccttacatctcttcttcttatatgttccttttgttaaaggacacaggtc 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 -----gtagtaccttacatctcttcttcttatatgttccttttgttaaaggacacaggtc 627
Query: 241 atctctatatatgtgaaactggtgatttacataaactgacttttcaagggatgccctatg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 atctctatatatgtgaaactggtgatttacataaactgacttttcaagggatgccctatg 567
Query: 301 aattaagatgttgaaagagacattgggaggcctgcatagatttttatccagatgaatgct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 aattaagatgttgaaagagacattgggaggcctgcatagatttttatccagatgaatgct 507
Query: 361 ttgttgtttgttcattctagttttggtttctctcccaattgcttattttctctgcggcct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ttgttgtttgttcattctagttttggtttctctcccaattgcttattttctctgcggcct 447
Query: 421 tgtattcatgtactggagcaataagactcctttctagtttacctctggtcattgaaaaac 480
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 446 tgtattcatgtactggagtaataagattcctttctagtttacctctggtcattgaaaaac 387
Query: 481 t 481
|
Sbjct: 386 t 386
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space: 410241
Effective search space used: 410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no536_e08.g1 MSMg01no536_e08.g1 CHROMAT_FILE:
MSMg01no536_e08.g1 PHD_FILE: MSMg01no536_e08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:19 2005
(495 letters)
>mm_chr11_28450607_28451501
Length = 895
Score = 926 bits (479), Expect = 0.0
Identities = 491/495 (99%)
Strand = Plus / Plus
Query: 1 ccttattttatattttgacaactccataaagacaaaatttgttaccatctcccagaacca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 ccttattttatattttgacaactccataaagacaaaatttgttaccatctcccagaatca 260
Query: 61 cttattcctgggttatatgcattgctagatctcaaaagcagaaatcatgacttctccaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttattcctgggttatatgcattgctagatctcaaaagcagaaatcatgacttctccaaa 320
Query: 121 tttccaattacaagtagagacctaccaatagagctggttcatcatagtcaacatattaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttccaattacaagtagagacctaccaatagagctggttcatcatagtcaacatattaaa 380
Query: 181 atctttttctaatataagtatactaaacagctgaaagaggcaatttccatttgactgctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atctttttctaatataagtatactaaacagctgaaagaggcaatttccatttgactgctc 440
Query: 241 aaaaatgagaactttatactctttataatgagaaagaaagagagagtaaaaacagatctg 300
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 441 aaaaatgagaactttatactcttcataatgagaaagaaagagagagtgaaaacagatctg 500
Query: 301 tgtctttgtagtttttcccaaatatcacccaggcttaacttaatcttcttgtaattgagt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtctttgtagtttttcccaaatatcacccaggcttaacttaatcttcttgtaattgagt 560
Query: 361 tgggtttttaatctgtttatatgtttatttaatttttttctagggagcacggaaagaaat 420
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 561 tgggtttttaatctgtttatatgtttatttaatttttttctagggagcacagaaagaaat 620
Query: 421 tcacatgagattcaataagaatgtttagtttcaagtggatcatttgaataaattagtatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcacatgagattcaataagaatgtttagtttcaagtggatcatttgaataaattagtatt 680
Query: 481 ctgtctactttttgt 495
|||||||||||||||
Sbjct: 681 ctgtctactttttgt 695
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space: 429225
Effective search space used: 429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
