Query= MSMg01no536_h21.b1 MSMg01no536_h21.b1 CHROMAT_FILE:
MSMg01no536_h21.b1 PHD_FILE: MSMg01no536_h21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:36 2005
(516 letters)
>mm_chr11_73055043_73055958
Length = 916
Score = 797 bits (412), Expect = 0.0
Identities = 489/526 (92%), Gaps = 23/526 (4%)
Strand = Plus / Plus
Query: 5 gaattcagtgctggttgtgatcgcctacagtagcagtgagacccccgtgagtggccaggg 64
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 gaattcagtgctggaggtgatcgcctacagtagcagtgagacccccgtgagtggccaggg 259
Query: 65 ccaggacaatgtata-ccggcccgaccctgcccttgctccagctccatctggcctctcac 123
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ccaggacaatgtatacccggcacgaccctgcccttgctccagctccatctggcctctcac 319
Query: 124 atagaaaacctgttgccaggagcctgtgtcctccagacctagtccacttcctttttcttg 183
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 320 atagaaaacctgttgccaggagcctgtgtcctccagacctagtccacctcctttttcttg 379
Query: 184 tgtttttcttagcaaatgaacgacaaccattagctcataaacacgagagcatctcagaag 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tgtttttcttagcaaatgaacgacaaccattagctcataaacacgagagcatctcagaag 439
Query: 244 tgcagagataaggacagctctccctatgccatggaaaaagccccatggagtccttttatt 303
|||||||||||||||||||||||||||| || | || |||||||||||||||
Sbjct: 440 tgcagagataaggacagctctccctatg-----ga----gtcctttggagtccttttatt 490
Query: 304 tgtgtaagcaggatcac-------ac--tgtaggataagcagttgctttcactcac---- 350
||||||||||||||||| || |||||| || ||||||||||||||||||
Sbjct: 491 tgtgtaagcaggatcacgctgtgcacgctgtaggttatgcagttgctttcactcactcac 550
Query: 351 gtgtgctgtagttagctttgtattagcacgcaggcgtctgtctcacttaaaagctgttgc 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 gtgtgctgtagttagctttgtattagcacgcaggcgtctgtctcacttaaaagctgttgc 610
Query: 411 ccagcgttcacccacgggacaggcaaactatctgaagttgctcacacactgcaggccact 470
|||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||
Sbjct: 611 ccagcgttcacccacgggactggcaagctatctgcagttgctcacacactgcaggccact 670
Query: 471 gacacaagcctgaggattttccccatgaaagatatgggaaactgca 516
|||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 671 gacacaagcctgaggattttccccgtgaaagttatgggaaactgca 716
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space: 458436
Effective search space used: 458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no536_h21.g1 MSMg01no536_h21.g1 CHROMAT_FILE:
MSMg01no536_h21.g1 PHD_FILE: MSMg01no536_h21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:37 2005
(512 letters)
>mm_chr11_73211873_73212784
Length = 912
Score = 990 bits (512), Expect = 0.0
Identities = 512/512 (100%)
Strand = Plus / Minus
Query: 1 aaggtgaccttatgccctcagctgtaatcctcaccttggattacaattatgtaatgctgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 aaggtgaccttatgccctcagctgtaatcctcaccttggattacaattatgtaatgctgt 653
Query: 61 actcaacctgtgagttcttaagtcaaatttaatataacttctatggttcttaattcttca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 actcaacctgtgagttcttaagtcaaatttaatataacttctatggttcttaattcttca 593
Query: 121 ttaatattccttcacctatggagatttaataggctatggacaagttgaaaggtccaagat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 ttaatattccttcacctatggagatttaataggctatggacaagttgaaaggtccaagat 533
Query: 181 cataatttatctgacagacctcaaaaacctatatgcttagtagtaatgggtacaattgtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 cataatttatctgacagacctcaaaaacctatatgcttagtagtaatgggtacaattgtt 473
Query: 241 tctcaatatagtctactgagcatgctattggcatcatttgttgtgcatttgtcatgtaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 tctcaatatagtctactgagcatgctattggcatcatttgttgtgcatttgtcatgtaga 413
Query: 301 atctaaactacagaggcataatctggcctgtgttcaatttcagacaagaagttataggtt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 atctaaactacagaggcataatctggcctgtgttcaatttcagacaagaagttataggtt 353
Query: 361 tatgaaaaatgtgtgagttggtcagatgtgcagtgtactataatgttagtgagtaaaaat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 tatgaaaaatgtgtgagttggtcagatgtgcagtgtactataatgttagtgagtaaaaat 293
Query: 421 tatctccttatgctgcagttcagagagtgtcactgaagttgatgtgggaaaacaaatatg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 tatctccttatgctgcagttcagagagtgtcactgaagttgatgtgggaaaacaaatatg 233
Query: 481 attaatttattttatataacattgtaaatgta 512
||||||||||||||||||||||||||||||||
Sbjct: 232 attaatttattttatataacattgtaaatgta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space: 452804
Effective search space used: 452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
