NNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCACTATGTATACCAGGATGGCCTTAAACTCACGAAGATTCA
CCTGCTTCTGTTTCTAGAGTGCTAGGTTGAAAGGCATGCATCACTGTGCC
TTTTCAAGCCTTTCTTGTGTGGGGGCTAAAATCCAGAGCATTGTGCATGT
ATGGCAAGATATCCAACACTGAGCTTCCTCCTCAGTCCTTATGTAAATGC
CAAATAAACCATTTGAGGAGATCCTTTTATATAATTCTGAAGCATGTATT
CACAATTGTTATTTTGCTAAATAATATGTTTACTGTTTATAAAGTCTAGA
GAAAATACATTGTTCTAATGGGTTTTGAGATAGGATTTCACTATGTATTC
AAACAGTGATCTGAATCTCCTGAGCTGGGGCTACAGGTTTATACAATGAT
ATCCATGACAGGTATAATATGAATATTATACATTGTTGTATGTGTGTGTA
CATGTGTATATTTAATCTTAGAATTTTAAAGTTTCAGTAGAACAATAAAT
GAATGAGTTATTAGTAAAATGAATAAATGAATAAATATTCTATTTTCTCA
CATTGAAATTACACTTATTTATTTGCTTATTTATTAGTGTATGTGTATGA
GCACATTCTACAGCACCCAAATGTAGCTCAGAGTACAATTTGCAGTGGTT
GGTTCTAGCTTTCCATTATGTGGATCCTTGGACTTAAAACTCTAGTCATG
AGACTTGACAGCAAGTGTCTTTTACCCACTGAGCCATATAACTTATCCTT
TTCTGTTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTCAGCAGAGAAATGGCCAAGAAGCACTTAAAGAATTGTTCA
ACATCCTTAGTCATCAGGGACATGCAAATCAAAACAACCCTGAGATTCCA
CCTCACACCAATCAGAACAGTTAAGATAAAAAAAAACTCAGGGGCCAGCA
TATACTGGTGAGGATCTAGAGAAAGAGGAACACTCCTCCATTGCTGGTGG
GACTGCAAGTGGGTACAACTCTGAAAATCAATCTGGCAACATCTCAGAAA
ACTGAAAATAGTTCTACCTGAAGACCCAACTATACTGTTTCTGGGCATAT
ACACAAAAGATGCCCCACCATACCACAAGGATGTGTGCTTCACCATGTTC
ATAGCAGCCTTATTTTAAATAACCAGAAGCTGGAAACAACTCAGATGTCC
CTCAACTAAAGAATGGATACAGAACGTGTTGTTCATTTATACAATTGAAC
AATATTCCACTATTAAAAATGAGGAGGACATCATGAATTTTGCAGGCAAA
TGTATGGAACTAGAAAATATCATCCTGAGTGAGGTAATCCAGACCCCAAA
AACATGCATGGTATATACTCATTGATAAATGGATATTAGCCAAAAAGTAC
AGAATACCCGTGATAGAACTCACAGACTATATGACATTTACTAGGACGAA
GGCCCAAGTGAGGATACTTCTATTCTACCTAGNANGGAGATATTACTGGA
GGCAAATATTACTTGAAGCNAAAGGAGGAGGACTTGGTTGGAAAAN

Query= MSMg01no536_l20.b1 MSMg01no536_l20.b1 CHROMAT_FILE:
MSMg01no536_l20.b1 PHD_FILE: MSMg01no536_l20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:14:56 2005
         (588 letters)



>mm_chr11_29353813_29354801
          Length = 989

 Score = 1002 bits (518), Expect = 0.0
 Identities = 572/606 (94%), Gaps = 27/606 (4%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcactatgtataccaggatggccttaaactcacgaagattcacctgcttctgtttc 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 895 gaattcactatgtagaccaggatggccttaaactcacgaagattcacctgcttctgtttc 836

                                                                       
Query: 65  tagagtgctaggttgaaaggcatgcatcactgtgccttttcaagcctttcttgtgtgggg 124
           ||||| |||||||||||||    ||||||||||||||||||||||||||| | |||||||
Sbjct: 835 tagagcgctaggttgaaag----gcatcactgtgccttttcaagcctttc-tatgtgggg 781

                                                                       
Query: 125 gctaaaatccagagcattgtgcatgtatggcaagatatccaacactgagcttcctcctca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 gctaaaatccagagcattgtgcatgtatggcaagatatccaacactgagcttcctcctca 721

                                                                       
Query: 185 gtccttatgt----------------------aaatgccaaataaaccatttgaggagat 222
           ||||||||||                      ||||||||||||||||||||||||||||
Sbjct: 720 gtccttatgtaacttatgtccttatgtatgtaaaatgccaaataaaccatttgaggagat 661

                                                                       
Query: 223 ccttttatataattctgaagcatgtattcacaattgttattttgctaaataatatgttta 282
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 660 gcttttatataattctgaagcatgtattcacaattgttattttgctaaataatatgtcta 601

                                                                       
Query: 283 ctgtttataaagtctagagaaaatacattgttctaatgggttttgagataggatttcact 342
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 ctgtttataaagtctagagaaaatacattgttctaatgggttttgagataggatttcact 541

                                                                       
Query: 343 atgtattcaaacagtgatctgaatctcctgagctggggctacaggtttatacaatgatat 402
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 atgtattcaaacagtgatctgaatctcctgagctggggctacaggtttatacaatgatat 481

                                                                       
Query: 403 ccatgacaggtataatatgaatattatacattgttgtatgtgtgtgtacatgtgtatatt 462
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 ccatgacaggtataatatgaatattatacattgttgtatgtgtgtgtacatgtgtatatt 421

                                                                       
Query: 463 taatcttagaattttaaagtttcagtagaacaataaatgaatgagttattagtaaaatga 522
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 taatcttagaattttcaagtttcagtagaacaataaatgaatgagttattagtaaaatga 361

                                                                       
Query: 523 ataaatgaataaatattctattttctcacattgaaattacacttatttatttgcttattt 582
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 360 ataaatgaataaatattctattttctcacgttgaaattacacttatttatttgcttattt 301

                 
Query: 583 attagt 588
           ||||||
Sbjct: 300 attagt 295


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 989
Length adjustment: 10
Effective length of query: 578
Effective length of database: 979
Effective search space:   565862
Effective search space used:   565862
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)