Query= MSMg01no536_p22.b1 MSMg01no536_p22.b1 CHROMAT_FILE:
MSMg01no536_p22.b1 PHD_FILE: MSMg01no536_p22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:15 2005
(612 letters)
>mm_chr11_98727112_98728121
Length = 1010
Score = 1135 bits (587), Expect = 0.0
Identities = 599/603 (99%), Gaps = 2/603 (0%)
Strand = Plus / Plus
Query: 10 gaattcagtacactgttcttactttctaactacccaagcatcgtagagagttgagccatc 69
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 gaattcagtacactgc-cttactttctaactacccaagcatcgtagagagttgagccatc 268
Query: 70 tgccttggcgtgtgaccttgctgtcactggttgggaccattctgtagacaggattggatg 129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tgccttggcgtgtgaccttgctgtcactggttgggaccattctgtagacaggattggatg 328
Query: 130 ctttcttgtcactcctttgaaattatgttctagctttttctttggctataatactcagaa 189
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 329 ctttcttgtcactcctttgaaattctgttctagctttttctttggctataatactcagaa 388
Query: 190 cactcggctggtaagtgaacattgtttaacctagaagtgtttctcaaagtcttggcattt 249
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 389 cactcggctggtaagtgaacattgtttaacctagaagtgtttc-caaagtcttggcattt 447
Query: 250 ctgaggcctgacgtggatttgccaaagatcgggcagttttaattctctctcactcttgat 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ctgaggcctgacgtggatttgccaaagatcgggcagttttaattctctctcactcttgat 507
Query: 310 agcagaaacggtgtttgcactagttggtgctaattacttagtggacacaaaggtgagatt 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 agcagaaacggtgtttgcactagttggtgctaattacttagtggacacaaaggtgagatt 567
Query: 370 caggggaggggaagggtaccaggaagagaatagttggtttttcccccctgaaacagagtt 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 caggggaggggaagggtaccaggaagagaatagttggtttttcccccctgaaacagagtt 627
Query: 430 tctctgtagccctggctgtcttggaactcactctgtagatcaggctggccttgaatttat 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 tctctgtagccctggctgtcttggaactcactctgtagatcaggctggccttgaatttat 687
Query: 490 aaaaacccacctgcctctgcctcctaagtgctggaatcaaaggcatgtgtctctactgcc 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 aaaaacccacctgcctctgcctcctaagtgctggaatcaaaggcatgtgtctctactgcc 747
Query: 550 cggccagaatagcttttaagttttactttggactatcatcacatgttcttgcttgatcgt 609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 cggccagaatagcttttaagttttactttggactatcatcacatgttcttgcttgatcgt 807
Query: 610 agc 612
|||
Sbjct: 808 agc 810
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1010
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1000
Effective search space: 602000
Effective search space used: 602000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no536_p22.g1 MSMg01no536_p22.g1 CHROMAT_FILE:
MSMg01no536_p22.g1 PHD_FILE: MSMg01no536_p22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:15:15 2005
(511 letters)
>mm_chr11_98910054_98910964
Length = 911
Score = 973 bits (503), Expect = 0.0
Identities = 509/511 (99%)
Strand = Plus / Minus
Query: 1 actctgccactctgcgacatgggctggccaggatcctttctgagtctgtctctcatctcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 actctgccactctgcgacatgggctggccaggatcctttctgagtctgtctctcatctcc 652
Query: 61 aaaaggaacgaggtggacagaacatgctgagagtagaacagagcttagcgagacccaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 aaaaggaacgaggtggacagaacatgctgagagtagaacagagcttagcgagacccaaat 592
Query: 121 ggttggatcggatttggagagcttccctttgggagcatccttcggagagctaggagttcc 180
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 ggttggatcagatttggagagcttccctttgggagcatccttcggagagctaggagttcc 532
Query: 181 ccaggctgaggccagggcagagcagcaggaagggagacccacctgtttggggtggaagtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 ccaggctgaggccagggcagagcagcaggaagggagacccacctgtttggggtggaagtt 472
Query: 241 gccgttgcggtcacagtttggaatggggatgatgaagaggtcttcgtgggtacggctctg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 gccgttgcggtcacagtttggaatggggatgatgaagaggtcttcgtgggtacggctctg 412
Query: 301 tgaggcggccagccgctccagggcccggtgcagctcgctctggcaggaaccctggggctg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 tgaggcggccagccgctccagggcccggtgcagctcgctctggcaggaaccctggggctg 352
Query: 361 gggacagaagtgcacactgctcagcacatgagaaaggcaggaagatcaaggcctgggtgc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 gggacagaagtgcacactgctcagcacatgagaaaggcaggaagatcaaggcctgggtgc 292
Query: 421 tggacaggggctcaagaagtgaaaccagaaactcagactcaggcaccaacagtggacatc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 tggacaggggctcaagaagtgaaaccagaaactcagactcaggcaccaacagtggacatc 232
Query: 481 caggaggaggttttgacactcagcagtccca 511
||||||||||||||||||||| |||||||||
Sbjct: 231 caggaggaggttttgacactcggcagtccca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space: 451401
Effective search space used: 451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
