Query= MSMg01no537_n23.b1 MSMg01no537_n23.b1 CHROMAT_FILE:
MSMg01no537_n23.b1 PHD_FILE: MSMg01no537_n23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:22 2005
(621 letters)
>mm_chr11_101731016_101732037
Length = 1022
Score = 961 bits (497), Expect = 0.0
Identities = 574/619 (92%), Gaps = 36/619 (5%)
Strand = Plus / Plus
Query: 5 gaattctgactcccctgc-tacaggaaaatctgatggctacacacaggcagagcagagag 63
||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgactccccggggt-caggaaaatctgatggctacacacaggcagagcagagag 263
Query: 64 ggtttgctcaaaagacccagtcttcaggtagccaggagagaaaagaagaacgaaggaacg 123
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 264 ggtttgctcaaaagacccagtcttcaggtagccaggagagaagagaagaacgaaggaacg 323
Query: 124 taagggaaacatccaaacctcaaaaactggaggtggg-tggagtggaaggcgtggacccg 182
|||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 324 taagagaaacattcaaacctcaaaaactggaggtggggtggagtggaaggcgtggacccg 383
Query: 183 gcttcgtgtttagtctgttggttcacggttttgtagagccatgtggctctcagagaggcc 242
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gcttcgggtttagtctgttggttcacggttttgtagagccatgtggctctcagagaggcc 443
Query: 243 tgcactgagctgaagggaccgagccagaagcaccgtttagacacatagacttgagcttgt 302
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 444 tgcactgagctgaagggaccgagccggaagcaccgtttagacacacagacttgagcttgt 503
Query: 303 gcaattccttcctactctcagcatcttggtttcctagcctgagattaccagtctcaacag 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gcaattccttcctactctcagcatcttggtttcctagcctgagattaccagtctcaacag 563
Query: 363 gaaccccacccccacctcggctggctgccacggagaactcatttgcctcttggcactcac 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gaaccccacccccacctcggctggctgccacggagaactcatttgcctcttggcactcac 623
Query: 423 agcatcctgggtggcagcggcagcggcagccgcagcggcggcggcggcagcggcagtggc 482
||||||||||||||||||||||||||||| ||||
Sbjct: 624 agcatcctgggtggcagcggcagcggcag---------------------------tggc 656
Query: 483 agtggcagaggctcccgcagctgccagtccttggacctttccttattattgagagtcttt 542
|| | || | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 ag----a-agtc-cccgcagctgccagtccttggacctttccttattattgagagtcttt 710
Query: 543 catcccccctcccggaaggatcggccacgtggaaactgagactgaccctttagggttgag 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 catcccccctcccggaaggatcggccacgtggaaactgagactgaccctttagggttgag 770
Query: 603 tctggagcgtgcttgttga 621
|||||||||||||||||||
Sbjct: 771 tctggagcgtgcttgttga 789
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1022
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1012
Effective search space: 618332
Effective search space used: 618332
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no537_n23.g1 MSMg01no537_n23.g1 CHROMAT_FILE:
MSMg01no537_n23.g1 PHD_FILE: MSMg01no537_n23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:22 2005
(585 letters)
>mm_chr11_101906112_101907096
Length = 985
Score = 1116 bits (577), Expect = 0.0
Identities = 583/585 (99%)
Strand = Plus / Minus
Query: 1 accttttcctttgtgtaccccaatatcccgtgcttgcctccaggggagcgaatgaccact 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 687 accttttcctttgtgtaccccaatatcccgtgcttgcctccaggggagcgaatggccact 628
Query: 61 ttgactagactatgactttgcagggtctcctacggggctggaacttctcaagggccagtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 627 ttgactagactatgactttgcagggtctcctacggggctggaacttctcaaggaccagtg 568
Query: 121 tcttcctgaccacacccagcctggacgttctgggcttgctctctagtttctgtcctaagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 tcttcctgaccacacccagcctggacgttctgggcttgctctctagtttctgtcctaagg 508
Query: 181 ctgtgcctggcacttgtgtttttttcctaagtagctgacaaaattttctgtaaataaaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ctgtgcctggcacttgtgtttttttcctaagtagctgacaaaattttctgtaaataaaga 448
Query: 241 gcagcttttactttgtgtgtttctaagtcgttatccattgccttgggcctcaggagacat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gcagcttttactttgtgtgtttctaagtcgttatccattgccttgggcctcaggagacat 388
Query: 301 gggatagaggaagtgattgtacatgtgcccagcctcacttggccctggaagcggctggtt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gggatagaggaagtgattgtacatgtgcccagcctcacttggccctggaagcggctggtt 328
Query: 361 cactctggactgttaacttctcaggaaatctgggagctgtttgttaagtggctggcaggt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 cactctggactgttaacttctcaggaaatctgggagctgtttgttaagtggctggcaggt 268
Query: 421 agaaatcatgctggaatgttgctaccaaaatagaaacccataaatattacagaccccagt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 agaaatcatgctggaatgttgctaccaaaatagaaacccataaatattacagaccccagt 208
Query: 481 gccattagctagcaaagaatccttcatcacgtgtcctttcacgtgcttgctttagcagag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gccattagctagcaaagaatccttcatcacgtgtcctttcacgtgcttgctttagcagag 148
Query: 541 catcatctctcctgtgtctgcttcaatgaaatattccttcctgag 585
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 catcatctctcctgtgtctgcttcaatgaaatattccttcctgag 103
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space: 560625
Effective search space used: 560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
