BAC Information

Click to search

BAC

Clone NameMSMg01-537P10
Chromosome11 (Build37)
Map Location 31,567,989 - 31,738,763
singlet/doubletdoublet
Overlap gene2310022M17Rik
Upstream geneLOC666470, LOC631243, Psme4, Gpr75, LOC100042469, 4933407N01Rik, Asb3, Chac2, Stc2
Downstream geneCpeb4, 4930524B15Rik, Nsg2, LOC669207, Il9r, 3300001G02Rik, Rhbdf1, Mpg, Mare, Hba-x, Hba-a1, F830116E18Rik, Hbq1, Sh3pxd2b, Ubtd2, 1700007I06Rik, Stk10, Fbxw11, LOC666616, 1700008A04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-537P10.T7 (MSMg01no537_p10.b1)MSMg01-537P10.TJ (MSMg01no537_p10.g1)
ACCAG604808AG604809
length742750
length of high quality
(start - end)		600 (50 - 649)653 (79 - 731)
definitionCHROMAT_FILE: MSMg01no537_p10.b1 PHD_FILE: MSMg01no537_p10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:16:29 2005CHROMAT_FILE: MSMg01no537_p10.g1 PHD_FILE: MSMg01no537_p10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:16:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,567,989 - 31,568,584)(31,738,111 - 31,738,763)
sequence
NNAAACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCACCCATTTTCTATTTTCTTTCCTTCTCTAGGAAGGTCCCAC
TGTATAGCTGAGGCTGGTCTGGAACTCACTACATAACCAAACCTGCCTGG
TTCTCCTAACATTCTTCCTGCCTCAACCTCTGAGTGCTGGGATGACAGGA
GCATGGCATCACACTTGGCTAAACTCAACAACTGATTCTCAAAGAACTAA
TTCAGTGCCACAGGGGAGAAGGCCCCATGAGCTGAACCTCTTCTGCCAGC
TCCCACCTTAACAACACTGGGGACCAACCTCTAACATAAAGGCCTCTGGG
GGATACAGCACAGCATTACTGCATGCGTTTCTTAGATCTGCACCAGCATA
ACTAAGAGCCTGTGCTTTGGCTCTCCCAGTCCAACTGCCTACACGTCTTT
GGCAGCCACGCCTTCACGAATCTCTGCACTATCAGCAAATGCAGTCATAT
CAGTCTTCTAAGATTTGCTTTTCTCACAATTCCCCGATGTTTCTATTTTC
AGAGTCCTGCTTCATAAGCTTTTATTCAACAATTTAGTGGATTAAGAAGT
GCCAAACAAGCCAGGCGTGGTGGCACACAGCTTTAATCCCAGCACTCAGG
AGGCAGAGGCAGGCAGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAAAG
TGAGGTTCAGGATAGCCAGGACTATACAGAGAAACCCTGTCT

TTTTGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGGCTGCCCTGGAAATTCTCC
ATTTGGTTCCCTGGATCCTCTCCCTGCCCTTCGCCCTCTCTTTGTTGCAG
CTACTGTGTCCTCTGGGCTCCCTGCCAGTTCAGCCAATGGGAGGCCCTGG
CACGAGAAGACAGAGGTTGAAGGTTTTCCTCCCTCCTGCCCGGTTGGTGT
CACGTGTCTGCCCCTCTCTGTGTCCCTCAGTGGAACAGTGTCTCATAGAC
TCACTGCCAACTTCACTTCCTTGATACATCCCTCACCCTGCTGCACTCCT
TATGTGTTTTCTTTCTGTGAAACATCTGCCGTAAGACCTCTTCCTCTGGA
GTCTTGTGAGAGACCATAGGGCTGATCATGTGCTGGGCCTAGGGCGCATG
ACGTGTCTGCTCACAGCCTATACCATTTCTCCACCCCCTACCCCCACCCC
TTCATCCTTAGACTTCATTAGTACTAGTTCAGATCTAGATAAGAAAAAGA
TAACTTAGAAGAAATCAGACCTTTTCTAGACTCTTCCAAAAGTATGTATT
TGCTTCTAATACTTTACTCAAACTTGCCCAGTTAAAATCAATTATTTAGT
TTATTTGGTTCCATTTGAAAGACTTTAGTCTCTTGTAGATCCAAAGACAA
AGCTGTGTCATATGGCTGTTACAAACACGGGTGCCTGATAACAACAGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no537_p10.b1 MSMg01no537_p10.b1 CHROMAT_FILE:
MSMg01no537_p10.b1 PHD_FILE: MSMg01no537_p10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:29 2005
         (600 letters)



>mm_chr11_31567785_31568784
          Length = 1000

 Score = 1145 bits (592), Expect = 0.0
 Identities = 595/596 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacccattttctattttctttccttctctaggaaggtcccactgtatagctgagg 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacccattttttattttctttccttctctaggaaggtcccactgtatagctgagg 264

                                                                       
Query: 65  ctggtctggaactcactacataaccaaacctgcctggttctcctaacattcttcctgcct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctggtctggaactcactacataaccaaacctgcctggttctcctaacattcttcctgcct 324

                                                                       
Query: 125 caacctctgagtgctgggatgacaggagcatggcatcacacttggctaaactcaacaact 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caacctctgagtgctgggatgacaggagcatggcatcacacttggctaaactcaacaact 384

                                                                       
Query: 185 gattctcaaagaactaattcagtgccacaggggagaaggccccatgagctgaacctcttc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gattctcaaagaactaattcagtgccacaggggagaaggccccatgagctgaacctcttc 444

                                                                       
Query: 245 tgccagctcccaccttaacaacactggggaccaacctctaacataaaggcctctggggga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgccagctcccaccttaacaacactggggaccaacctctaacataaaggcctctggggga 504

                                                                       
Query: 305 tacagcacagcattactgcatgcgtttcttagatctgcaccagcataactaagagcctgt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tacagcacagcattactgcatgcgtttcttagatctgcaccagcataactaagagcctgt 564

                                                                       
Query: 365 gctttggctctcccagtccaactgcctacacgtctttggcagccacgccttcacgaatct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gctttggctctcccagtccaactgcctacacgtctttggcagccacgccttcacgaatct 624

                                                                       
Query: 425 ctgcactatcagcaaatgcagtcatatcagtcttctaagatttgcttttctcacaattcc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctgcactatcagcaaatgcagtcatatcagtcttctaagatttgcttttctcacaattcc 684

                                                                       
Query: 485 ccgatgtttctattttcagagtcctgcttcataagcttttattcaacaatttagtggatt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ccgatgtttctattttcagagtcctgcttcataagcttttattcaacaatttagtggatt 744

                                                                   
Query: 545 aagaagtgccaaacaagccaggcgtggtggcacacagctttaatcccagcactcag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aagaagtgccaaacaagccaggcgtggtggcacacagctttaatcccagcactcag 800


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space:   584100
Effective search space used:   584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no537_p10.g1 MSMg01no537_p10.g1 CHROMAT_FILE:
MSMg01no537_p10.g1 PHD_FILE: MSMg01no537_p10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:29 2005
         (653 letters)



>mm_chr11_31737911_31738963
          Length = 1053

 Score = 1263 bits (653), Expect = 0.0
 Identities = 653/653 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctggctgccctggaaattctccatttggttccctggatcctctccctgcccttcgccctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 ctggctgccctggaaattctccatttggttccctggatcctctccctgcccttcgccctc 794

                                                                       
Query: 61  tctttgttgcagctactgtgtcctctgggctccctgccagttcagccaatgggaggccct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 tctttgttgcagctactgtgtcctctgggctccctgccagttcagccaatgggaggccct 734

                                                                       
Query: 121 ggcacgagaagacagaggttgaaggttttcctccctcctgcccggttggtgtcacgtgtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 ggcacgagaagacagaggttgaaggttttcctccctcctgcccggttggtgtcacgtgtc 674

                                                                       
Query: 181 tgcccctctctgtgtccctcagtggaacagtgtctcatagactcactgccaacttcactt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 tgcccctctctgtgtccctcagtggaacagtgtctcatagactcactgccaacttcactt 614

                                                                       
Query: 241 ccttgatacatccctcaccctgctgcactccttatgtgttttctttctgtgaaacatctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 ccttgatacatccctcaccctgctgcactccttatgtgttttctttctgtgaaacatctg 554

                                                                       
Query: 301 ccgtaagacctcttcctctggagtcttgtgagagaccatagggctgatcatgtgctgggc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 ccgtaagacctcttcctctggagtcttgtgagagaccatagggctgatcatgtgctgggc 494

                                                                       
Query: 361 ctagggcgcatgacgtgtctgctcacagcctataccatttctccaccccctacccccacc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 ctagggcgcatgacgtgtctgctcacagcctataccatttctccaccccctacccccacc 434

                                                                       
Query: 421 ccttcatccttagacttcattagtactagttcagatctagataagaaaaagataacttag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ccttcatccttagacttcattagtactagttcagatctagataagaaaaagataacttag 374

                                                                       
Query: 481 aagaaatcagaccttttctagactcttccaaaagtatgtatttgcttctaatactttact 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 aagaaatcagaccttttctagactcttccaaaagtatgtatttgcttctaatactttact 314

                                                                       
Query: 541 caaacttgcccagttaaaatcaattatttagtttatttggttccatttgaaagactttag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 caaacttgcccagttaaaatcaattatttagtttatttggttccatttgaaagactttag 254

                                                                
Query: 601 tctcttgtagatccaaagacaaagctgtgtcatatggctgttacaaacacggg 653
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 tctcttgtagatccaaagacaaagctgtgtcatatggctgttacaaacacggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space:   670649
Effective search space used:   670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |