Query= MSMg01no538_a01.b1 MSMg01no538_a01.b1 CHROMAT_FILE:
MSMg01no538_a01.b1 PHD_FILE: MSMg01no538_a01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:32 2005
(689 letters)
>mm_chr11_35566852_35567940
Length = 1089
Score = 491 bits (254), Expect = e-143
Identities = 295/318 (92%), Gaps = 15/318 (4%)
Strand = Plus / Minus
Query: 372 aggtattccttctattttatctgatatattttattttattttattttattttattttatt 431
|||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1089 aggtattccttctattttatctgata---------------tattttattttattttatt 1045
Query: 432 ttattttattttatttttgagacagaatctccgtacataatcctttattggcctggagtt 491
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1044 ttattttattttatttttgagacagaatctccgtacataaccctttattggcctggagtt 985
Query: 492 tgctataaagacggggctacccttgaactcagagagatccatctgcctctccctccccag 551
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 984 tgctataaagacggggctacccttgaactcacagagatccatctgcctctccctccccag 925
Query: 552 ttctggtattaaaggtatgtatcactaagtctggcccaacatgttctttttaagtgctat 611
||| |||||||||||||||||||| ||| ||||| ||||||||||||||||||||||| |
Sbjct: 924 ttccggtattaaaggtatgtatcattaaatctggaccaacatgttctttttaagtgcttt 865
Query: 612 agtattgcacgttaattacttaaaacaatgcatttcaccatgacagtttcatgacacacg 671
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 864 agtattgcacgttaattacttaaaacaatgcatttcaccatgacagtttcatgacacatg 805
Query: 672 tccctactttgatcatat 689
||||||||||||||||||
Sbjct: 804 tccctactttgatcatat 787
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1089
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1079
Effective search space: 732641
Effective search space used: 732641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no538_a01.g1 MSMg01no538_a01.g1 CHROMAT_FILE:
MSMg01no538_a01.g1 PHD_FILE: MSMg01no538_a01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:32 2005
(478 letters)
>mm_chr11_35400115_35400991
Length = 877
Score = 795 bits (411), Expect = 0.0
Identities = 462/479 (96%), Gaps = 3/479 (0%)
Strand = Plus / Plus
Query: 1 aattctgtggtgggctgccttgagctctgtcaacagagtcttaaagtccttgaggtcggt 60
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 aattctctggtgggctgccttgagctctgtcaacagagtcgtaaagtccttgaggtcggt 260
Query: 61 gtcacatcctgctcctcccttagtatttgcctaagcagagtctggctgattgtaaactgc 120
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 261 gtcacatcctgctcctcccttagtatttgcccaagcggagtctggctgattgtaaactgc 320
Query: 121 acagagataacagaactcgtatccagcattgcttcacatagataggcttgtagacatgag 180
|||||||||| |||||||||||||| | |||||||||||||| |||||||||||||||||
Sbjct: 321 acagagataatagaactcgtatccatcgttgcttcacatagacaggcttgtagacatgag 380
Query: 181 ttcccctgcaaaaaagaaaaaaagggtcactatcctggtggacagtggttctctccaaag 240
|||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 ttcccctgcaaaaaag-acaaaagggccactatcctggtggacagtggttctctccaaag 439
Query: 241 gcagaaaact-ataaagtccctttcctgcgtggcaggtgactcacaggataccttggaga 299
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gcagaaaa-tgataaagtccctttcctgcgtggcaggtgactcacaggataccttggaga 498
Query: 300 gcttttggtgccccagagatccatggagctgttgccttggctgagaattccctgctgaat 359
|||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 499 gcttgtggtgtcccagagatccatggagttgttgccttggctgagaattccctgctgaat 558
Query: 360 tctctactcagtcagaaaaaggagaatgtccttggaaagtctgtcaaggcatcctctgcg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tctctactcagtcagaaaaaggagaatgtccttggaaagtctgtcaaggcatcctctgcg 618
Query: 420 ggtgactgtatccagtagcccatgatcccacatcccaatggcaagctttggtgactcac 478
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 619 ggtgactgtatccagtagcccatgatcccacatcccaatggtaagctttggtgactcac 677
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 877
Length adjustment: 10
Effective length of query: 468
Effective length of database: 867
Effective search space: 405756
Effective search space used: 405756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
