Query= MSMg01no538_b08.b1 MSMg01no538_b08.b1 CHROMAT_FILE:
MSMg01no538_b08.b1 PHD_FILE: MSMg01no538_b08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:39 2005
(691 letters)
>mm_chr11_24342808_24343898
Length = 1091
Score = 998 bits (516), Expect = 0.0
Identities = 519/520 (99%), Gaps = 1/520 (0%)
Strand = Plus / Minus
Query: 5 gaattctctcataaaacagtttccagaaaaacatcacatgacacaactgggtctcccaca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gaattctctcataaaacagtttccagaaaaacatcacatgacacaactgggtctcccaca 460
Query: 65 aagccacatctttctacttcacaggtcccttggttatacccagcacctactggagaatta 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 aagccacatctttctacttcacaggtcccttggttatacccagcacctactggagaatta 400
Query: 125 aaagaacacccagtcttactagttaaaacacaatagttccactgaaacaaagatgccacg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 aaagaacacccagtcttactagttaaaacacaatagttccactgaaacaaagatgccacg 340
Query: 185 aataaagtcaaaagttgagagaggaattgagaaaacatttttaaattaattttgtttatt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 aataaagtcaaaagttgagagaggaattgagaaaacatttttaaattaattttgtttatt 280
Query: 245 tatcttatgtgtattgtctatatgtgtgttcatatatcatgtgagtgcccaatgcctcag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 tatcttatgtgtattgtctatatgtgtgttcatatatcatgtgagtgcccaatgcctcag 220
Query: 305 tggccagaagagaacatcagattcccgggaactaagttacaagacagctgggagcttcca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 tggccagaagagaacatcagattcccgggaactaagttacaagacagctgggagcttcca 160
Query: 365 tgtgagtgctggaaattgacccaggctcttcagcaagaacaaccagtgtccctaaccatt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 tgtgagtgctggaaattgacccaggctcttcagcaagaacaaccagtgtccctaaccatt 100
Query: 425 gagccattgctccagtcttaggagaaaaaattctttttaaagtattgagtttcatgcatt 484
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 99 gagccattgctccagtcttaggag-aaaaattctttttaaagtattgagtttcatgcatt 41
Query: 485 tgtgtgtatgtgtgtatgtgtgtgtgtgagagagagagag 524
||||||||||||||||||||||||||||||||||||||||
Sbjct: 40 tgtgtgtatgtgtgtatgtgtgtgtgtgagagagagagag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 691
Length of database: 1091
Length adjustment: 10
Effective length of query: 681
Effective length of database: 1081
Effective search space: 736161
Effective search space used: 736161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no538_b08.g1 MSMg01no538_b08.g1 CHROMAT_FILE:
MSMg01no538_b08.g1 PHD_FILE: MSMg01no538_b08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:16:39 2005
(634 letters)
>mm_chr11_24193703_24194736
Length = 1034
Score = 1218 bits (630), Expect = 0.0
Identities = 633/634 (99%)
Strand = Plus / Plus
Query: 1 aatttgaagaatttattttttatttttaattaccattactgcattttaagaaaaagaaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatttgaagaatttattttttatttttaattaccattactgcattttaagaaaaagaaac 260
Query: 61 cagtttggctgcttccctgctagagctcagagctgagtttgccggagaccactctctgct 120
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagtttggctgcttccctgctggagctcagagctgagtttgccggagaccactctctgct 320
Query: 121 cctggggatgaagctgatctcagttcacagcccattgtctttacacccttcctggtgact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctggggatgaagctgatctcagttcacagcccattgtctttacacccttcctggtgact 380
Query: 181 aatactgtaagatttcctttaaaaacaattcttccttgaagtgggtttcaaatccccaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatactgtaagatttcctttaaaaacaattcttccttgaagtgggtttcaaatccccaaa 440
Query: 241 gaatttctaggagggaggaaaaaaaatcctttaattgaaagtgagagaaaacaaaacaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaatttctaggagggaggaaaaaaaatcctttaattgaaagtgagagaaaacaaaacaaa 500
Query: 301 gaaagcataagagatctgacaaaaatatcatgtttaatgaaatcaagttctacccctgca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaaagcataagagatctgacaaaaatatcatgtttaatgaaatcaagttctacccctgca 560
Query: 361 gatggctggggagacacaagaatgacccaaagacagaaaaaccggtttccctcccgtgtt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gatggctggggagacacaagaatgacccaaagacagaaaaaccggtttccctcccgtgtt 620
Query: 421 ctgcaaagtgtggcttttcttttgaatattctgcgtacctgaccaggacctgtcccagct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctgcaaagtgtggcttttcttttgaatattctgcgtacctgaccaggacctgtcccagct 680
Query: 481 tctgagcctgactatccaggtagcaggaggcgttctcagctgttctctgagcctgcccag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tctgagcctgactatccaggtagcaggaggcgttctcagctgttctctgagcctgcccag 740
Query: 541 cttcttaactgtgtgttaaggtttaatcacttccaagtgattccttggcttcgttctttg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cttcttaactgtgtgttaaggtttaatcacttccaagtgattccttggcttcgttctttg 800
Query: 601 taaagcgtcagaagtctcattgaccttgggagtg 634
||||||||||||||||||||||||||||||||||
Sbjct: 801 taaagcgtcagaagtctcattgaccttgggagtg 834
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space: 638976
Effective search space used: 638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
