Query= MSMg01no538_l09.b1 MSMg01no538_l09.b1 CHROMAT_FILE:
MSMg01no538_l09.b1 PHD_FILE: MSMg01no538_l09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:25 2005
(610 letters)
>mm_chr11_101812429_101813438
Length = 1010
Score = 1152 bits (596), Expect = 0.0
Identities = 602/604 (99%)
Strand = Plus / Plus
Query: 5 gaattcatccctgctcccctgctgactctgaggtaccccaaactgctaatttcattggct 64
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatcccagctcccctgctgactctgaggtaccccaaactgctaatttcattggct 264
Query: 65 tccttgtaatcgtttgaccaagacattagaggtcaggagaagggagaaagaaggtggtag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tccttgtaatcgtttgaccaagacattagaggtcaggagaagggagaaagaaggtggtag 324
Query: 125 attcaggagggaaatggagagaatgaaggagatttctaggacatagaagccagactgggc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 attcaggagggaaatggagagaatgaaggagatttctaggacatagaagccagactgggc 384
Query: 185 ctgtgctggttggagaaccagaggctaggctgaaggtttgcagggctgggtagcatggag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctgtgctggttggagaaccagaggctaggctgaaggtttgcagggctgggtagcatggag 444
Query: 245 gagctgtggtgaagccagggtccagggtacagcaccagagaggttggactacttagctgg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gagctgtggtgaagccagggtccagggtacagcaccagagaggttggactacttagctgg 504
Query: 305 ccggatgaacagaagcaggggtgggtgggtgaataaactggtcccacggtgactttgtag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ccggatgaacagaagcaggggtgggtgggtgaataaactggtcccacggtgactttgtag 564
Query: 365 tgtgtgtctttatctccctagagagaaagaaaagggcaggggaagaaatttagagggagt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgtgtgtctttatctccctagagagaaagaaaagggcaggggaagaaatttagagggagt 624
Query: 425 ttatgaatgacggagatttaaagaaaagcctttgctggaaaaggcatgcaaagtacagag 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttatgaatgacggagatttaaagaaaagcctttgctggaaaaggcatgcaaagtacagag 684
Query: 485 gagtcaagatgaagaaatagaagaagtcgaagccttagtgggggtgacaagagcgtagcc 544
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 685 gagtcaagatgaagaaatagaagaagttgaagccttagtgggggtgacaagagcgtagcc 744
Query: 545 aggagactaaggagagggaatgttggtgtatgtatgtatgtgtgtatgtatttatttttt 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aggagactaaggagagggaatgttggtgtatgtatgtatgtgtgtatgtatttatttttt 804
Query: 605 tatg 608
||||
Sbjct: 805 tatg 808
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1010
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1000
Effective search space: 600000
Effective search space used: 600000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no538_l09.g1 MSMg01no538_l09.g1 CHROMAT_FILE:
MSMg01no538_l09.g1 PHD_FILE: MSMg01no538_l09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:25 2005
(528 letters)
>mm_chr11_101952982_101953913
Length = 932
Score = 975 bits (504), Expect = 0.0
Identities = 524/532 (98%), Gaps = 4/532 (0%)
Strand = Plus / Minus
Query: 1 agggccagcctgggaaagttagtgagacagtatctctgagaagaaacagaagaaaagaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 agggccagcctgggaaagttagtgagacagtatctctgagaagaaacagaagaaaagaac 673
Query: 61 tggtaaactg-ttctgatcccgtgtctgatgccaattaataaaggattaggatgagttag 119
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 tggtaaactgtttccgatcccgtgtctgatgccaattaataaaggattaggatgagttag 613
Query: 120 taaaaggacttccgtggagcctagcaaaatctaggagtagattaaactgtgatggagccc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 taaaaggacttccgtggagcctagcaaaatctaggagtagattaaactgtgatggagccc 553
Query: 180 ctaaacttcagcaagagagagtacagactgtttccagtttatttattaagctggggcact 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 ctaaacttcagcaagagagagtacagactgtttccagtttatttattaagctggggcact 493
Query: 240 gaagggaggagagaagtgggtgtcacagacagggccaagcaaggttcctctcaaaggtgt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 gaagggaggagagaagtgggtgtcacagacagggccaagcaaggttcctctcaaaggtgt 433
Query: 300 gtgggtggtcagacagggacacactcttcaggacatacacttcagaagtccttgggtgga 359
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 432 gtgggtggtcagacagggacacactcttcaggacacacacttcagaagtccttgggtgga 373
Query: 360 cctcgaggatctgggctcagtcagggcacatctgatgacccgagaaagagacaaaccacc 419
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 372 cctcgaggatctgggctcagtcagggcacatctgatgacccgagaaagagacgaaccacc 313
Query: 420 cacttgtgcccctggcacctagctagagccttccaaacgtctacaggggacctgtattta 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 cacttgtgcccctggcacctagctagagccttccaaacgtctacaggggacctgtattta 253
Query: 480 aggaccattttctgtgtgcctatgtacagat---ggggggggggactgagac 528
|||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct: 252 aggaccattttctgtgtgtctatgtacagattggggggggggggactgagac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 932
Length adjustment: 10
Effective length of query: 518
Effective length of database: 922
Effective search space: 477596
Effective search space used: 477596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
