Query= MSMg01no538_l22.b1 MSMg01no538_l22.b1 CHROMAT_FILE:
MSMg01no538_l22.b1 PHD_FILE: MSMg01no538_l22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:28 2005
(627 letters)
>mm_chr11_89110010_89111037
Length = 1028
Score = 1187 bits (614), Expect = 0.0
Identities = 623/626 (99%), Gaps = 3/626 (0%)
Strand = Plus / Plus
Query: 4 ggaattc-catcaacaaattaattagttttgaaatcaacaaacagaacttggtttctcct 62
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcacatcaacaaattaattagttttgaaatcaacaaacagaacttggtttctcct 263
Query: 63 agtacagcttcccaacaggagtgggtggaaattgtcctgcaaatcaaaatatattcctgg 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agtacagcttcccaacaggagtgggtggaaattgtcctgcaaatcaaaatatattcctgg 323
Query: 123 taagctgggttcgtattacagacttttttttttt-gtacttagcgtattagtcatcagat 181
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct: 324 taagctgggttcgtattacagac-tttttttttttgtacttagcgtattagtcatcagat 382
Query: 182 caaacaaagagctatgcaattactaactctttagattggggacacctcggttggggttcg 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 caaacaaagagctatgcaattactaactctttagattggggacacctcggttggggttcg 442
Query: 242 taatccttggggtaacccacagatgagcaattctccaagggaacgactaccaccattttt 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 taatccttggggtaacccacagatgagcaattctccaagggaacgactaccaccattttt 502
Query: 302 ataagtaatatatttacatgtatggagatctgacttttttggaagagagatagtgtatag 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ataagtaatatatttacatgtatggagatctgacttttttggaagagagatagtgtatag 562
Query: 362 ctttcatcacactttcagcagggtgtctcaaaatgattaaaaagtactattctacattga 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ctttcatcacactttcagcagggtgtctcaaaatgattaaaaagtactattctacattga 622
Query: 422 tccttttatgccaattgttagcaagaagaacaaaattgtattcacagagtaaaaggttgc 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tccttttatgccaattgttagcaagaagaacaaaattgtattcacagagtaaaaggttgc 682
Query: 482 ctgtactttctttttaaaaagaatattaactacaccaactatttttttagagtaccttca 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ctgtactttctttttaaaaagaatattaactacaccaactatttttttagagtaccttca 742
Query: 542 tattttttgagatcatacttttattttatgtgtatgggtgctttaactgcatgtatgtgc 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 tattttttgagatcatacttttattttatgtgtatgggtgctttaactgcatgtatgtgc 802
Query: 602 atcatgtgcatgcagtgctcatggag 627
||||||||||||||||||||||||||
Sbjct: 803 atcatgtgcatgcagtgctcatggag 828
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1028
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1018
Effective search space: 628106
Effective search space used: 628106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no538_l22.g1 MSMg01no538_l22.g1 CHROMAT_FILE:
MSMg01no538_l22.g1 PHD_FILE: MSMg01no538_l22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:28 2005
(373 letters)
>mm_chr11_89247680_89248452
Length = 773
Score = 721 bits (373), Expect = 0.0
Identities = 373/373 (100%)
Strand = Plus / Minus
Query: 1 tcagtagttggtttacctaacgctttttccatgtctcagtgaagacaaaaaaaaaatctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 tcagtagttggtttacctaacgctttttccatgtctcagtgaagacaaaaaaaaaatctt 514
Query: 61 taacctgagcttataaaatcttctcactaaaaatgtataagctattatttgggacattgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 taacctgagcttataaaatcttctcactaaaaatgtataagctattatttgggacattgt 454
Query: 121 tttgaccaatgtcagcaaagtctacccagttaactctcgattaactgacggcatcaggaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 tttgaccaatgtcagcaaagtctacccagttaactctcgattaactgacggcatcaggaa 394
Query: 181 attcttcttccttaatttcatattgccaactattgaaaaatacagcatcagattgccatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 attcttcttccttaatttcatattgccaactattgaaaaatacagcatcagattgccatg 334
Query: 241 gtaagtacccacatggggaatgcagcttagctattggaacctcattgcttcttcctttgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 gtaagtacccacatggggaatgcagcttagctattggaacctcattgcttcttcctttgt 274
Query: 301 aggcatgtttaaacacacctagtgcattctgcatgaccattctatctccatgggctctac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 aggcatgtttaaacacacctagtgcattctgcatgaccattctatctccatgggctctac 214
Query: 361 ctgctccttctag 373
|||||||||||||
Sbjct: 213 ctgctccttctag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 773
Length adjustment: 9
Effective length of query: 364
Effective length of database: 764
Effective search space: 278096
Effective search space used: 278096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
