Query= MSMg01no538_n21.b1 MSMg01no538_n21.b1 CHROMAT_FILE:
MSMg01no538_n21.b1 PHD_FILE: MSMg01no538_n21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:37 2005
(627 letters)
>mm_chr11_12315698_12316727
Length = 1030
Score = 1091 bits (564), Expect = 0.0
Identities = 610/626 (97%), Gaps = 3/626 (0%)
Strand = Plus / Minus
Query: 5 gaattctagttacccacagctctaatatttgatcttgaggattcttggagagtttaatag 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 gaattctagttacccacagctctaatatttgatcttgaggattcttggagagtttaatag 771
Query: 65 gcctctttactaccctagtggagataatgaaagaaaaattaaaagagaatacaagaagat 124
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 gcctctttactaccctattggagataatgaaagaaaaattaaaagagaatacaagaagat 711
Query: 125 gcatttagatttatttatgtgtgggtggattttggttgaagtctagttagtttagtttgt 184
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 gcatttagatttacttatgtgtgggtggattttggttgaagtctagttagtttagtttgt 651
Query: 185 gttgatttttatttgatttagttcaaactcagagttcagtgttgaaggta--tttttgtc 242
||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct: 650 gttgatttttatttgatttagttcaaactcacagttcagtgttgaaggtaagtttttgtc 591
Query: 243 ttttggatat-aaaaggtaacacattttcctaggctctatgcatttagggctctatttaa 301
| |||||||| |||||||||||||||||||||||| || ||||| |||| ||| ||||||
Sbjct: 590 tgttggatataaaaaggtaacacattttcctaggcgctttgcatctaggactcgatttaa 531
Query: 302 tacaaataacaccttgttctgcagtgacagcatcacatttaattatcaaagggcaaatta 361
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 530 tacaaataacaccttgttctgcagtgacagcatcacaattaattatgaaagggcaaatta 471
Query: 362 ccctttctctgttctttaataccaaaacagtattcatagtcttaacttatcttctaaaaa 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 ccctttctctgttctttaataccaaaacagtattcatagtcttaacttatcttctaaaaa 411
Query: 422 tacttggtagcattcataaaaataaagcggaaactcactgctggccaacatagagtgttt 481
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 tacttggtagcattcaaaaaaataaagcggaaactcactgctggccaacatagagtgttt 351
Query: 482 tctaatagtaactgtcagagaatagagcacttggaagctattcggggtatgatgccttta 541
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 tctaatagtaactgtcagagaatagagcacttggaagctattcggggtatgatgcctttg 291
Query: 542 aggaagaattaaaaaaaaaaaggaataaaaacgtctttactttcttttggggaaaatata 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 aggaagaattaaaaaaaaaaaggaataaaaacgtctttactttcttttggggaaaatata 231
Query: 602 taaacacaaatagtgtctgtcggatg 627
||||||||||||||||||||||||||
Sbjct: 230 taaacacaaatagtgtctgtcggatg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1030
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1020
Effective search space: 629340
Effective search space used: 629340
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no538_n21.g1 MSMg01no538_n21.g1 CHROMAT_FILE:
MSMg01no538_n21.g1 PHD_FILE: MSMg01no538_n21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:17:37 2005
(543 letters)
>mm_chr11_12205157_12206099
Length = 943
Score = 980 bits (507), Expect = 0.0
Identities = 534/543 (98%)
Strand = Plus / Plus
Query: 1 tcagggcaggatgggatctgtctacagccctagcctgcctgctgggtgtcataaatatgt 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 tcagggcaggatgggatctgtctacagccctagcctgcctgctgggtgtcataagtatga 260
Query: 61 gggcctgcagaaaggcaagttggggatatggttcaggcctttacctggctcttccaccct 120
||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggtctgcagaaaggcaagttgaggatatggttcaggcctttacctggctcttccaccct 320
Query: 121 ttgtagaccactacactgcagatcttgtaggtgtcttctcttcatgaagtgagcttactg 180
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgtagaccactatactgcagatcttgtaggtgtcttctcttcatgaagtgagcttactg 380
Query: 181 ggctcactcagcaaatcctattcacttgtccccactagggaggtgacactgtgagtgagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggctcactcagcaaatcctattcacttgtccccactagggaggtgacactgtgagtgagg 440
Query: 241 attaacagtcatagagttggcctctgaaatcgctatgtgccttggtgtgagggggctctt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attaacagtcatagagttggcctctgaaatcgctatgtgccttggtgtgagggggctctt 500
Query: 301 cagagatgccacaatggtttaaggtgacaaaactagcattttattgatagctatctagtt 360
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct: 501 cagagatgccacaatggtttgaggtgacaaagctagcattttattgatagctatctagtt 560
Query: 361 gattcttctttaaagatttatttatttttattttcatgtgtattagtagtttcctgcatg 420
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 561 gattcttctttaaagatttatttatttttactttcatgtgtattagtagtttcctgcatg 620
Query: 421 tatgtatgtgtaccatgtgcatgcctggtgtccatggaagtcagaataactttataagat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tatgtatgtgtaccatgtgcatgcctggtgtccatggaagtcagaataactttataagat 680
Query: 481 ggttgtgagtcatgatgtaagtgctggaaaaagaacctaggtcctctgcaagagcaacga 540
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtttgtgagtcatgatgtaagtgctggaaaaagaacctaggtcctctgcaagagcaacga 740
Query: 541 ttg 543
|||
Sbjct: 741 ttg 743
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space: 497289
Effective search space used: 497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
