Query= MSMg01no539_k15.b1 MSMg01no539_k15.b1 CHROMAT_FILE:
MSMg01no539_k15.b1 PHD_FILE: MSMg01no539_k15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:42 2005
(552 letters)
>mm_chr11_57147291_57148239
Length = 949
Score = 953 bits (493), Expect = 0.0
Identities = 539/565 (95%), Gaps = 20/565 (3%)
Strand = Plus / Minus
Query: 1 aaatgaaactggactagagaaggtaggtttttgtcttctttccctcacatcatgaatgag 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 863 aaatgaaactggactagagaaggtagg-ttttgtcttctttccctcacatcatgaatgag 805
Query: 61 aacactgaggtttaggtgggagaatgaactggtcaatatcactca----------aatac 110
||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 804 aacactgaggtttaggtgggagaatgaactggtcaatatcactcagatcaaggtcaatac 745
Query: 111 tagccatacaggcagggcttcctagctgtcaaatagagtttggtgctcctttgggcatgg 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tagccatacaggcagggcttcctagctgtcaaatagagtttggtgctcctttgggcatgg 685
Query: 171 ggaaatttcaaggaaggtggaaaggcagagactccagagagagaattgactagagttcag 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ggaaatttcaaggaaggtggaaaggcagagactccagagagagaattgactagagttcag 625
Query: 231 accaagctgttcactagatacatgaccatgcatctcaagtctccatttcctcttctgggg 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 accaagctgttcactagatacatgaccatgcatctcaagtctccatttcctcttctgggg 565
Query: 291 ggcattaagtccccaccttgcagagctaggacagagaggtggtgcaccagaagccccagc 350
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ggcattaagtccccaccttgcagagctaggacagagaggtggtgcaccagaagcc----- 510
Query: 351 acctaatgagtgtgctgaacaaggactactccccattccatagtcaatatgaaattgaaa 410
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 509 -cctaatgagtgtgctgaacaaggactactccccatttcatagtcaatatgaaattgaaa 451
Query: 411 aaaggcttagcattgtcaccagcatagcttggcacccatgggaa---aggtcaaaggaca 467
||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 450 aaaggctcagcattatcaccagcatagcttggcacccatgggaaaggaggtcaaaggaca 391
Query: 468 ctacctcttgggaactcggttaaaagtacaggtggtgggattcagagtctgtgataaaca 527
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct: 390 ctacctcttgggaactcggttaaaagtacaggtggtaggattcagagcctgtgataaaca 331
Query: 528 ggtgtgggattcagaatctgtgaca 552
||||||||||||||| |||||||||
Sbjct: 330 ggtgtgggattcagagtctgtgaca 306
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 949
Length adjustment: 10
Effective length of query: 542
Effective length of database: 939
Effective search space: 508938
Effective search space used: 508938
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no539_k15.g1 MSMg01no539_k15.g1 CHROMAT_FILE:
MSMg01no539_k15.g1 PHD_FILE: MSMg01no539_k15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:18:42 2005
(678 letters)
>mm_chr11_56991715_56992792
Length = 1078
Score = 1241 bits (642), Expect = 0.0
Identities = 669/678 (98%)
Strand = Plus / Plus
Query: 1 attcaccaaataattcttgagcacctatggtgttccaagcactctgctggctccgggaca 60
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 attcaccaaatagttcttgagcacctatggtgttccaagcactctgctggctccaggaca 260
Query: 61 cagacaattactacattcaaagaattggtatgggacaaaacagctacagatgtagacaga 120
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 cagacaattactacattcaaagaattggtatggaacaaaacagctacagatgtagacaga 320
Query: 121 agccaaggctgtggctttagacacagtgactaaaggatcgaaactgaggctggtggtgat 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 agccaaggctgtggctttagacacagtgactaaaggatcaaaactgaggctggtggtgat 380
Query: 181 gaaagacagggaagaagcctgcttgggaaagcgagacaagttaaggcaggagaggcaaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaagacagggaagaagcctgcttgggaaagcgagacaagttaaggcaggagaggcaaag 440
Query: 241 gaacagtcctgcaggttagaagggaacagagcacagagtccctgagataaacccctggaa 300
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 441 gaacagtcctgcaggttagaagggaacagagcacagagtccctgaaataaacccctggaa 500
Query: 301 tggaggtgcaaagtgacagccaggatggccaatcagggagtgaggagactgagcaaggca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tggaggtgcaaagtgacagccaggatggccaatcagggagtgaggagactgagcaaggca 560
Query: 361 tgaaaggtcagcaggggagtagttgagactccatgtcagggtcagatatacagggactat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgaaaggtcagcaggggagtagttgagactccatgtcagggtcagatatacagggactat 620
Query: 421 tcccctgtgcaatgggaatctcagaaccacaaggaagtggaatgatacatagcaactgac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcccctgtgcaatgggaatctcagaaccacaaggaagtggaatgatacatagcaactgac 680
Query: 481 tttgctttgtgtcattgattggcttcctttaacttcagggagaaaatggattccaccact 540
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tttgctttgtttcattgattggcttcctttaacttcagggagaaaatggattccaccact 740
Query: 541 aaacccccaatgccatgctgcctctcatctagtctagatttaaaactgtgcactcacatg 600
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 741 acacccccaatgccatgctgcctctcatctagtctagatttaaaactgtggactcacatg 800
Query: 601 tatgtgtgcatgtagatgtatgtttgtatatacatgtgtgcatgtgtgttgcagaaattt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tatgtgtgcatgtagatgtatgtttgtatatacatgtgtgcatgtgtgttgcagaaattt 860
Query: 661 ttaatcccaaactgggtt 678
||||| ||||||||||||
Sbjct: 861 ttaataccaaactgggtt 878
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1078
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1068
Effective search space: 713424
Effective search space used: 713424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
