NAAACCAATAAXXXXXXXXXXXXXXXXXXXXXXXATTTCCAGAGATCCGC
GGAATTCCATGATTTTGCACTCACTGTCGCACTTCTCTGGCTGTGAAATG
AGTTCCTTGGTCAGAAGCAATACTGTGTGGAATACCATGGCGATAGATAA
GGCATTCTGTGAGTCCATGGATGGTGGTTTTGGCAGAATTATGTGCAGTA
AAGGCAAATCCATAACCAGAATAAGGATCTACTCCAGTAAGAACAAAACA
TTGTCCTTTCCATGGAGGAAGTGGTCTAATGTCGTCAACCTGCCACCAGG
TTGCTGGCTGGTCACCTCTAGGAATGGTGCCACATCTGGGGCTCAGTGTT
GGTTTCTGCTGTTGGCAGATCTGGAATTCAGCAACAGCTATAACCAGGTC
AGCCTTGGTGAGTGGAAGTCCATGTTGCTAAGCCCAAGCATAACTTCCAT
CTTGGCCACCATGGCCACTTTGTTCATGTGCCCAATGAGCAATGACAGGG
ATGGCTGGTGAAAGAGGCTGACTGTCCACAGAACACGTCATCTTATCCAC
TAGATTATTGAACTCCTCCTCAGCTGAAGCCACCTTTTGGTGAGCATTTA
CATGGAACATCCTTTGCCCATTTGGACAGATCTATTCACATACTTCTTCC
CCAGACGCCTTTCTCACCAATTTTCCCATCGTGATCTTTCCCAGTCCCTG
ACCATCCAGCCAATCN

TTTTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATGGTACACAGTTCACAATTGC
CTGTAACTCCAGCTTCAAGGGATCTGATACTCTCTTCTGGCCTCCATGGG
CCTATGCGTGCACACACATGTACACACATACTCACACATTCATATACATA
TATATATATGTATGTGTGTGCATATATAAAATATTTTCTTAAAATTAAGT
TCGTACAGTAGATAGGACAAAAGCCTTTAGGCATTATTATTGTACAAATA
CACTATATATTTCAAAAAACTAGGAGGACTTTGAATCTTTCCACAAGGAA
TGATAAATGTTTGAGGAGCTAAGTATGTTTAACTTGATTGAAGCATTACA
TGATGTATACATGTATTATATATTACATGACATCCCATTAAAATGTACAA
TTTAAGCATCTGTATCAGTTAAAAATATAAAAACAGAAATTTGGGAATCT
ATATATAACTTGGCAATTTTGTAATTCTTCTTAGGCTCAATAAAATAAAC
TGTAAATAATAAGCTAGTTACAAAACAGTAATTTCAGATCTATTGGTGAA
AAATTAAGGACATTTCAAACTCCATTTTGAGATAGTGTCTTCCTTTTATC
CATACAAGTTTCTAGGCCCAAGGCATCTACCCACCACAGCCTCCCAAGTA
GATGAGATTTTGATGGGTGACACTGCN

Query= MSMg01no540_d05.g1 MSMg01no540_d05.g1 CHROMAT_FILE:
MSMg01no540_d05.g1 PHD_FILE: MSMg01no540_d05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:19:24 2005
         (614 letters)



>mm_chr11_23658834_23659845
          Length = 1012

 Score = 1160 bits (600), Expect = 0.0
 Identities = 610/614 (99%), Gaps = 3/614 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggtacacagttcacaattgcctgtaactccagcttcaagggatctgatactctcttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 atggtacacagttcacaattgcctgtaactccagcttcaagggatctgatactctcttct 261

                                                                       
Query: 61  ggcctccatgggcctatgcgtgcacacacatgtacacacatactcacacattcatataca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ggcctccatgggcctatgcgtgcacacacatgtacacacatactcacacattcatataca 321

                                                                       
Query: 121 tatatatatatgtatgtgtgtgcatatataaaatattttcttaaaattaagttcgtacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tatatatatatgtatgtgtgtgcatatataaaatattttcttaaaattaagttcgtacag 381

                                                                       
Query: 181 tagataggacaaaagcctttaggcattattattgtacaaatacactatatatttcaaaaa 240
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 382 tagataggacaaaagcctttaggcat-attattgtacaaatacactatatatttcaaaaa 440

                                                                       
Query: 241 actaggaggactttgaatctttccacaaggaatgataaatgtttgaggagctaagtatgt 300
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actaggaggactttgaatgtttccacaaggaatgataaatgtttgaggagctaagtatgt 500

                                                                       
Query: 301 ttaacttgattgaagcattacatgatgtatacatgtattatatattacatgacatcccat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttaacttgattgaagcattacatgatgtatacatgtattatatattacatgacatcccat 560

                                                                       
Query: 361 taaaatgtacaatttaagcatctgtatcagttaaaaatataaaaacagaaatttgggaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taaaatgtacaatttaagcatctgtatcagttaaaaatataaaaacagaaatttgggaat 620

                                                                       
Query: 421 ctatatataacttggcaattttgtaattcttcttaggctcaataaaataaactgtaaata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctatatataacttggcaattttgtaattcttcttaggctcaataaaataaactgtaaata 680

                                                                       
Query: 481 ataagctagttacaaaacagtaatttcagatctattggtgaaaaattaaggacatttcaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ataagctagttacaaaacagtaatttcagatctattggtgaaaaattaaggacatttcaa 740

                                                                       
Query: 541 actccattttgagatagtgtcttccttttatccatacaagtttctaggcccaaggcatct 600
           ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 actccattttgagatagt--cttccttttatccatacaagtttctaggcccaaggcatct 798

                         
Query: 601 acccaccacagcct 614
           ||||||||||||||
Sbjct: 799 acccaccacagcct 812


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1012
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1002
Effective search space:   605208
Effective search space used:   605208
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)